MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 156886 bp
Accession: NC_008789 Location: 335985..492870 Organism: Halorhodospira halophila SL1 Replicon: chromosome
Accession: NC_008789 Location: 335985..492870 Organism: Halorhodospira halophila SL1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHAL_RS01520 () | 331587..332186 | - | 600 | WP_011813112.1 | hypothetical protein | - |
| HHAL_RS01525 () | 332258..333367 | - | 1110 | WP_011813113.1 | hypothetical protein | - |
| HHAL_RS01530 () | 333374..334531 | - | 1158 | WP_011813114.1 | transglycosylase SLT domain-containing protein | - |
| HHAL_RS01535 () | 334640..335410 | - | 771 | WP_011813115.1 | 3',5'-cyclic-nucleotide phosphodiesterase | - |
| HHAL_RS01540 () | 335456..336217 | - | 762 | WP_011813116.1 | class I SAM-dependent methyltransferase | - |
| HHAL_RS01545 () | 336380..336574 | + | 195 | WP_011813117.1 | hypothetical protein | - |
| HHAL_RS01550 () | 336626..338245 | + | 1620 | WP_041595272.1 | HD family phosphohydrolase | - |
| HHAL_RS01555 () | 338248..340260 | + | 2013 | WP_011813119.1 | adenylate/guanylate cyclase domain-containing protein | - |
| HHAL_RS01560 () | 340361..341707 | + | 1347 | WP_187147870.1 | tetratricopeptide repeat protein | - |
| HHAL_RS01565 () | 341697..343325 | + | 1629 | WP_011813121.1 | FecR domain-containing protein | - |
| HHAL_RS01570 () | 343384..344136 | + | 753 | WP_011813122.1 | proteasome-type protease | - |
| HHAL_RS01575 () | 344088..345125 | - | 1038 | WP_011813123.1 | putative zinc-binding peptidase | - |
| HHAL_RS01580 () | 345129..346061 | - | 933 | WP_011813124.1 | alpha-E domain-containing protein | - |
| HHAL_RS01585 () | 346061..347527 | - | 1467 | WP_011813125.1 | circularly permuted type 2 ATP-grasp protein | - |
| HHAL_RS01590 () | 347588..348880 | - | 1293 | WP_011813126.1 | arsenic transporter | - |
| HHAL_RS01595 () | 349063..350562 | - | 1500 | WP_011813127.1 | YdiU family protein | - |
| HHAL_RS01600 () | 350650..352569 | - | 1920 | WP_011813128.1 | Sensor histidine kinase RcsC | VF |
| HHAL_RS01605 () | 352815..354179 | + | 1365 | WP_011813129.1 | sensor domain-containing diguanylate cyclase | - |
| HHAL_RS01610 () | 354191..355309 | + | 1119 | WP_011813130.1 | Twitching mobility protein | VF |
| HHAL_RS12420 () | 355452..357392 | - | 1941 | WP_144446063.1 | Ig-like domain-containing protein | - |
| HHAL_RS01620 () | 357434..358048 | - | 615 | WP_011813132.1 | hypothetical protein | - |
| HHAL_RS01625 () | 358211..359248 | + | 1038 | WP_011813133.1 | Twitching mobility protein | VF |
| HHAL_RS13170 () | 359296..360111 | - | 816 | WP_144446064.1 | hypothetical protein | - |
| HHAL_RS01630 () | 360125..360649 | - | 525 | WP_144446065.1 | hypothetical protein | - |
| HHAL_RS01635 () | 360606..361031 | - | 426 | WP_187147871.1 | hypothetical protein | - |
| HHAL_RS01640 () | 361141..361740 | - | 600 | WP_011813136.1 | hypothetical protein | VF |
| HHAL_RS13395 () | 362113..362265 | - | 153 | WP_187147872.1 | hypothetical protein | - |
| HHAL_RS12840 () | 362433..362918 | - | 486 | WP_081432130.1 | hypothetical protein | VF |
| HHAL_RS12845 () | 363587..364726 | + | 1140 | WP_011813139.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| HHAL_RS13175 () | 365003..365572 | - | 570 | WP_144446066.1 | hypothetical protein | - |
| HHAL_RS12425 () | 366382..366810 | - | 429 | WP_144446152.1 | hypothetical protein | VF |
| HHAL_RS01655 () | 367085..368305 | - | 1221 | WP_011813142.1 | Type II secretion system protein F | VF |
| HHAL_RS01660 () | 368318..370156 | - | 1839 | WP_011813143.1 | Type II secretion system protein E | VF |
| HHAL_RS01665 () | 370180..371421 | - | 1242 | WP_011813144.1 | tetratricopeptide repeat protein | - |
| HHAL_RS01670 () | 371418..372293 | - | 876 | WP_011813145.1 | hypothetical protein | VF |
| HHAL_RS01675 () | 372323..373939 | - | 1617 | WP_011813146.1 | Type 3 secretion system secretin | VF |
| HHAL_RS01680 () | 373936..374307 | - | 372 | WP_011813147.1 | hypothetical protein | VF |
| HHAL_RS01685 () | 374309..374968 | - | 660 | WP_011813148.1 | type II secretion system protein M | - |
| HHAL_RS01690 () | 374975..376513 | - | 1539 | WP_041594998.1 | hypothetical protein | - |
| HHAL_RS01710 () | 381985..383682 | - | 1698 | WP_011813150.1 | hypothetical protein | VF |
| HHAL_RS01715 () | 383811..385001 | - | 1191 | WP_081432243.1 | MFS transporter | - |
| HHAL_RS01720 () | 385086..386690 | - | 1605 | WP_011813152.1 | BCCT family transporter | - |
| HHAL_RS01725 () | 386904..388877 | - | 1974 | WP_011813153.1 | Aerobic respiration control sensor protein ArcB | VF |
| HHAL_RS01730 () | 388958..389698 | - | 741 | WP_011813154.1 | Motility protein B | VF |
| HHAL_RS01735 () | 389695..390498 | - | 804 | WP_041594999.1 | Chemotaxis protein PomA | VF |
| HHAL_RS01740 () | 390742..391620 | + | 879 | WP_011813156.1 | EamA family transporter | - |
| HHAL_RS01745 () | 391635..393176 | + | 1542 | WP_041595283.1 | Cardiolipin synthase C | VF |
| HHAL_RS01750 () | 393173..394174 | - | 1002 | WP_011813158.1 | HTH-type transcriptional regulator CysB | VF |
| HHAL_RS01755 () | 394264..395484 | - | 1221 | WP_011813159.1 | YeeE/YedE family protein | - |
| HHAL_RS01760 () | 395767..398226 | + | 2460 | WP_011813160.1 | hypothetical protein | VF |
| HHAL_RS01765 () | 398318..399061 | + | 744 | WP_049751370.1 | beta-phosphoglucomutase family hydrolase | - |
| HHAL_RS01770 () | 399081..399878 | + | 798 | WP_011813162.1 | trehalose-phosphatase | - |
| HHAL_RS01775 () | 399875..402298 | + | 2424 | WP_011813163.1 | glycoside hydrolase family 65 protein | - |
| HHAL_RS01780 () | 402364..402861 | + | 498 | WP_011813164.1 | hypothetical protein | - |
| HHAL_RS13400 () | 402950..403153 | + | 204 | WP_011813165.1 | TonB-like protein | - |
| HHAL_RS01790 () | 403294..404766 | + | 1473 | WP_011813166.1 | SLC13 family permease | - |
| HHAL_RS01795 () | 404843..406978 | - | 2136 | WP_011813167.1 | ATP-dependent DNA helicase DinG | - |
| HHAL_RS01800 () | 407080..407547 | + | 468 | WP_011813168.1 | rhodanese-like domain-containing protein | - |
| HHAL_RS01805 () | 407682..408860 | + | 1179 | WP_011813169.1 | 4Fe-4S binding protein | - |
| HHAL_RS01810 () | 408857..411358 | + | 2502 | WP_011813170.1 | molybdopterin-dependent oxidoreductase | - |
| HHAL_RS01815 () | 411397..412143 | + | 747 | WP_041595000.1 | 4Fe-4S dicluster domain-containing protein | - |
| HHAL_RS01820 () | 412175..413356 | + | 1182 | WP_011813172.1 | polysulfide reductase NrfD | - |
| HHAL_RS01825 () | 413413..414279 | + | 867 | WP_011813173.1 | molecular chaperone TorD family protein | - |
| HHAL_RS01830 () | 414414..414719 | - | 306 | WP_011813174.1 | hypothetical protein | - |
| HHAL_RS01835 () | 415043..416020 | + | 978 | WP_011813175.1 | TAXI family TRAP transporter solute-binding subunit | - |
| HHAL_RS01840 () | 416152..418323 | + | 2172 | WP_011813176.1 | TRAP transporter permease | - |
| HHAL_RS01845 () | 418330..419265 | + | 936 | WP_011813177.1 | AEC family transporter | - |
| HHAL_RS12430 () | 419270..421885 | - | 2616 | WP_011813178.1 | Sensor histidine kinase RcsC | VF |
| HHAL_RS01855 () | 421990..423546 | - | 1557 | WP_011813179.1 | class I SAM-dependent methyltransferase | - |
| HHAL_RS01860 () | 423733..425766 | - | 2034 | WP_011813180.1 | hypothetical protein | VF |
| HHAL_RS01865 () | 425864..427210 | - | 1347 | WP_144446153.1 | MFS transporter | - |
| HHAL_RS01870 () | 427424..428350 | + | 927 | WP_011813182.1 | Response regulator PleD | VF |
| HHAL_RS01875 () | 428444..432244 | + | 3801 | WP_011813183.1 | PAS domain S-box protein | - |
| HHAL_RS01880 () | 432192..433778 | - | 1587 | WP_144446067.1 | PAS domain-containing protein | - |
| HHAL_RS12435 () | 433896..434219 | - | 324 | WP_011813185.1 | BON domain-containing protein | - |
| HHAL_RS01890 () | 434506..435102 | + | 597 | WP_011813186.1 | PAS domain S-box protein | - |
| HHAL_RS01895 () | 434996..437041 | + | 2046 | WP_081432133.1 | hypothetical protein | VF |
| HHAL_RS01900 () | 437186..437596 | + | 411 | WP_041595002.1 | hypothetical protein | - |
| HHAL_RS01905 () | 437840..438493 | + | 654 | WP_011813189.1 | LysE family transporter | - |
| HHAL_RS12440 () | 438575..439807 | - | 1233 | WP_011813190.1 | HD domain-containing protein | - |
| HHAL_RS01915 () | 439905..440870 | - | 966 | WP_011813191.1 | putative zinc-binding metallopeptidase | - |
| HHAL_RS01920 () | 441023..441223 | - | 201 | WP_011813192.1 | CPXCG motif-containing cysteine-rich protein | - |
| HHAL_RS01925 () | 441386..442060 | + | 675 | WP_011813193.1 | SRPBCC family protein | - |
| HHAL_RS01930 () | 442064..442594 | - | 531 | WP_011813194.1 | DUF2269 family protein | - |
| HHAL_RS01935 () | 442784..443107 | - | 324 | WP_041595003.1 | hypothetical protein | - |
| HHAL_RS01940 () | 443145..444539 | - | 1395 | WP_011813196.1 | ATP-binding cassette domain-containing protein | - |
| HHAL_RS01945 () | 444536..445300 | - | 765 | WP_011813197.1 | energy-coupling factor transporter transmembrane protein EcfT | - |
| HHAL_RS01950 () | 445278..445877 | - | 600 | WP_011813198.1 | MptD family putative ECF transporter S component | - |
| HHAL_RS01955 () | 445874..446563 | - | 690 | WP_011813199.1 | hypothetical protein | VF |
| HHAL_RS01960 () | 446560..447117 | - | 558 | WP_011813200.1 | Intracellular heme transport protein HutX | VF |
| HHAL_RS01965 () | 447107..448465 | - | 1359 | WP_011813201.1 | Anaerobilin synthase | VF |
| HHAL_RS01970 () | 448476..450572 | - | 2097 | WP_187147873.1 | TonB-dependent receptor | - |
| HHAL_RS01975 () | 450952..451158 | + | 207 | WP_011813203.1 | hemin uptake protein HemP | - |
| HHAL_RS01980 () | 451339..453390 | + | 2052 | WP_011813204.1 | TonB-dependent receptor plug domain-containing protein | - |
| HHAL_RS12850 () | 453458..453970 | - | 513 | WP_011813205.1 | cytochrome c | - |
| HHAL_RS01990 () | 454072..456075 | - | 2004 | WP_011813206.1 | TonB-dependent receptor plug domain-containing protein | - |
| HHAL_RS01995 () | 456368..456613 | + | 246 | WP_011813207.1 | hypothetical protein | - |
| HHAL_RS02000 () | 456617..457090 | + | 474 | WP_011813208.1 | hypothetical protein | - |
| HHAL_RS02005 () | 457196..458113 | - | 918 | WP_011813209.1 | homocysteine S-methyltransferase family protein | - |
| HHAL_RS02010 () | 458195..459466 | - | 1272 | WP_144446068.1 | MFS transporter | - |
| HHAL_RS02015 () | 459463..460023 | - | 561 | WP_011813211.1 | TetR/AcrR family transcriptional regulator | - |
| HHAL_RS02020 () | 460550..461053 | + | 504 | WP_187147890.1 | hypothetical protein | - |
| HHAL_RS02025 () | 461117..461323 | + | 207 | WP_041595007.1 | DUF3185 family protein | - |
| HHAL_RS02030 () | 461340..462074 | - | 735 | WP_011813214.1 | Crp/Fnr family transcriptional regulator | - |
| HHAL_RS13185 () | 462261..462410 | + | 150 | WP_144446069.1 | lmo0937 family membrane protein | - |
| HHAL_RS02035 () | 462571..463074 | - | 504 | WP_011813215.1 | hypothetical protein | - |
| HHAL_RS02040 () | 463279..464328 | - | 1050 | WP_011813216.1 | fatty acid desaturase | - |
| HHAL_RS12445 () | 464651..465868 | + | 1218 | WP_187147874.1 | Vitamin B12 transporter BtuB | VF |
| HHAL_RS12450 () | 465884..466699 | + | 816 | WP_081432138.1 | TonB-dependent receptor | - |
| HHAL_RS02050 () | 466716..467252 | + | 537 | WP_011813217.1 | cytochrome c | - |
| HHAL_RS02055 () | 467277..470720 | - | 3444 | WP_011813218.1 | pyruvate carboxylase | - |
| HHAL_RS02060 () | 470787..471566 | - | 780 | WP_011813219.1 | alpha/beta hydrolase | - |
| HHAL_RS02065 () | 471700..472314 | - | 615 | WP_011813220.1 | heme-binding protein | - |
| HHAL_RS02070 () | 472939..473595 | + | 657 | WP_081432139.1 | tRNA 5-carboxymethoxyuridine methyltransferase | VF |
| HHAL_RS02075 () | 473567..474088 | + | 522 | WP_187147875.1 | hypothetical protein | - |
| HHAL_RS02080 () | 474613..474876 | + | 264 | WP_011813221.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| HHAL_RS02085 () | 474873..475133 | + | 261 | WP_011813222.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| HHAL_RS02090 () | 475347..476324 | - | 978 | WP_011813223.1 | hypothetical protein | - |
| HHAL_RS13405 () | 476514..476666 | - | 153 | WP_187147876.1 | hypothetical protein | - |
| HHAL_RS02095 () | 476768..477256 | + | 489 | WP_041595301.1 | GNAT family N-acetyltransferase | - |
| HHAL_RS02100 () | 477881..479546 | - | 1666 | Protein_419 | IS1634 family transposase ISPfe2 | Transposase |
| HHAL_RS02105 () | 479943..481178 | - | 1236 | WP_011813225.1 | type II restriction endonuclease | - |
| HHAL_RS02110 () | 481178..481681 | - | 504 | WP_011813226.1 | DNA mismatch endonuclease Vsr | - |
| HHAL_RS02115 () | 481678..482988 | - | 1311 | WP_011813227.1 | DNA (cytosine-5-)-methyltransferase | - |
| HHAL_RS02120 () | 483209..483475 | + | 267 | WP_011813228.1 | helix-turn-helix domain-containing protein | - |
| HHAL_RS13410 () | 483997..484140 | - | 144 | WP_187147877.1 | hypothetical protein | - |
| HHAL_RS02125 () | 484131..484721 | - | 591 | WP_011813229.1 | IS1634 family transposase ISAzo6 | Transposase |
| HHAL_RS12855 () | 484823..485332 | + | 510 | WP_081432140.1 | IS1634 family transposase | - |
| HHAL_RS12860 () | 485601..486398 | - | 798 | WP_187147878.1 | HNH endonuclease | - |
| HHAL_RS02145 () | 487062..488156 | - | 1095 | WP_011813231.1 | IS5 family transposase ISHha2 | Transposase |
| HHAL_RS13195 () | 488276..488677 | + | 402 | WP_011813232.1 | hypothetical protein | - |
| HHAL_RS02150 () | 488709..490190 | + | 1482 | WP_011813233.1 | DUF2779 domain-containing protein | - |
| HHAL_RS02155 () | 490262..491926 | - | 1665 | WP_011813234.1 | ATP-binding domain-containing protein | - |
| HHAL_RS02160 () | 492206..492967 | + | 762 | WP_011813235.1 | ADP-ribosylglycohydrolase family protein | - |
| HHAL_RS02165 () | 492964..493416 | + | 453 | WP_041595011.1 | gamma-glutamylcyclotransferase | - |
| HHAL_RS02175 () | 494641..496563 | + | 1923 | WP_011813238.1 | threonine--tRNA ligase | - |
| HHAL_RS02180 () | 496567..497118 | + | 552 | WP_081432143.1 | translation initiation factor IF-3 | - |
| HHAL_RS02185 () | 497198..497392 | + | 195 | WP_011813240.1 | 50S ribosomal protein L35 | - |
| HHAL_RS02190 () | 497411..497770 | + | 360 | WP_011813241.1 | 50S ribosomal protein L20 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|