MGE detailed information
MGE type: Prophage MGE length: 25132 bp
Accession: NC_008686 Location: 412240..437371 Organism: Paracoccus denitrificans PD1222 Replicon: chromosome
Accession: NC_008686 Location: 412240..437371 Organism: Paracoccus denitrificans PD1222 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PDEN_RS02175 () | 407573..408388 | - | 816 | WP_011746785.1 | uracil-DNA glycosylase | - |
| PDEN_RS02180 () | 408494..408895 | - | 402 | WP_011746786.1 | hypothetical protein | - |
| PDEN_RS02185 () | 409050..410171 | + | 1122 | WP_011746787.1 | 3-isopropylmalate dehydrogenase | - |
| PDEN_RS02190 () | 410232..411185 | + | 954 | WP_011746788.1 | DMT family transporter | - |
| PDEN_RS02200 () | 411827..412228 | + | 402 | WP_011746789.1 | hypothetical protein | - |
| PDEN_RS02205 () | 412240..412752 | + | 513 | WP_011746790.1 | ImmA/IrrE family metallo-endopeptidase | - |
| PDEN_RS02210 () | 412764..413840 | + | 1077 | WP_011746791.1 | beta family protein | - |
| PDEN_RS25915 () | 413895..414005 | - | 111 | Protein_450 | transposase | - |
| PDEN_RS25920 () | 414070..414585 | + | 516 | WP_011746792.1 | IS5 family transposase ISPko1 | Transposase |
| PDEN_RS25925 () | 415141..416178 | + | 1038 | WP_011746793.1 | toprim domain-containing protein | - |
| PDEN_RS02225 () | 416175..419363 | + | 3189 | WP_011746794.1 | RNA-directed DNA polymerase | - |
| PDEN_RS02230 () | 419360..420268 | + | 909 | WP_011746795.1 | hypothetical protein | - |
| PDEN_RS25930 () | 420268..421179 | + | 912 | WP_011746796.1 | DNA polymerase III subunit epsilon | - |
| PDEN_RS02240 () | 421270..421971 | - | 702 | WP_128493026.1 | hypothetical protein | Toxin Detail |
| PDEN_RS02245 () | 421964..422515 | - | 552 | WP_011746798.1 | SocA family protein | Antitoxin Detail |
| PDEN_RS02250 () | 422858..423349 | - | 492 | Protein_458 | type I restriction endonuclease subunit R | - |
| PDEN_RS02255 () | 423504..423743 | - | 240 | WP_074810467.1 | hypothetical protein | - |
| PDEN_RS02260 () | 423758..424588 | - | 831 | WP_011746800.1 | hypothetical protein | - |
| PDEN_RS02265 () | 424675..424929 | + | 255 | WP_011746801.1 | helix-turn-helix domain-containing protein | - |
| PDEN_RS25935 () | 425120..425320 | + | 201 | WP_074810464.1 | hypothetical protein | - |
| PDEN_RS02270 () | 425511..425717 | + | 207 | WP_198140517.1 | helix-turn-helix domain-containing protein | - |
| PDEN_RS25540 () | 425929..426456 | + | 528 | WP_011746803.1 | hypothetical protein | - |
| PDEN_RS02280 () | 426466..428598 | + | 2133 | WP_011746804.1 | hypothetical protein ; Integrase | Integrase |
| PDEN_RS02285 () | 428588..429586 | + | 999 | WP_011746805.1 | TniB family NTP-binding protein | - |
| PDEN_RS02290 () | 429588..431069 | + | 1482 | WP_011746806.1 | TniQ family protein | - |
| PDEN_RS02295 () | 431234..432751 | + | 1518 | WP_011746807.1 | IS21 family transposase ISRel5 | Transposase |
| PDEN_RS02300 () | 432748..433284 | + | 537 | Protein_469 | IS21 family transposase ISRel5 | Transposase |
| PDEN_RS02305 () | 433308..434282 | + | 975 | Protein_470 | hypothetical protein ; Integrase | Integrase |
| PDEN_RS02310 () | 434326..435324 | + | 999 | WP_011746810.1 | IS110 family transposase ISMdi12 | Transposase |
| PDEN_RS26795 () | 435638..435778 | - | 141 | WP_157137423.1 | hypothetical protein | - |
| PDEN_RS26800 () | 435898..435980 | - | 83 | Protein_473 | IS5/IS1182 family transposase | - |
| PDEN_RS25940 () | 436349..437371 | + | 1023 | WP_175537037.1 | Spermidine/putrescine import ATP-binding protein PotA | VF |
| PDEN_RS02325 () | 437396..438448 | + | 1053 | WP_049792290.1 | ABC transporter substrate-binding protein | - |
| PDEN_RS02330 () | 438445..439695 | + | 1251 | WP_011746813.1 | ABC transporter permease | - |
| PDEN_RS02335 () | 439692..440477 | + | 786 | WP_011746814.1 | ABC transporter permease | - |
| PDEN_RS02340 () | 440577..441365 | + | 789 | WP_011746815.1 | GntR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|