MGE detailed information
MGE type: Prophage MGE length: 97173 bp
Accession: NC_008258 Location: 220475..317647 Organism: Shigella flexneri 5 str. 8401 Replicon: chromosome
Accession: NC_008258 Location: 220475..317647 Organism: Shigella flexneri 5 str. 8401 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SFV_RS01025 () | 219633..220436 | + | 804 | WP_000997035.1 | 2,5-didehydrogluconate reductase DkgB | - |
| SFV_RS01030 () | 220475..221821 | - | 1347 | WP_005104824.1 | IS4 family transposase IS4 | Transposase |
| SFV_RS01035 () | 221871..222785 | - | 915 | WP_000648578.1 | HTH-type transcriptional regulator DmlR | VF |
| SFV_RS01040 () | 223026..223826 | + | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| SFV_RS01045 () | 223904..224674 | + | 771 | WP_000211684.1 | class I SAM-dependent methyltransferase | - |
| SFV_RS01050 () | 224722..226080 | - | 1359 | WP_000644677.1 | Membrane-bound lytic murein transglycosylase D | VF |
| SFV_RS01055 () | 226152..226907 | - | 756 | WP_001052754.1 | hydroxyacylglutathione hydrolase | - |
| SFV_RS01060 () | 226941..227663 | + | 723 | WP_005060310.1 | class I SAM-dependent methyltransferase | - |
| SFV_RS01065 () | 227660..228127 | - | 468 | WP_000917889.1 | ribonuclease HI | - |
| SFV_RS01070 () | 228192..228923 | + | 732 | WP_024260220.1 | DNA polymerase III subunit epsilon | - |
| SFV_RS01080 () | 229263..230309 | - | 1047 | WP_000402247.1 | hypothetical protein | VF |
| SFV_RS01085 () | 230320..231304 | - | 985 | Protein_203 | hypothetical protein | VF |
| SFV_RS01095 () | 231301..233184 | - | 1884 | Protein_204 | type VI secretion system baseplate subunit TssF | - |
| SFV_RS01100 () | 233200..233694 | - | 495 | WP_001276640.1 | hypothetical protein | VF |
| SFV_RS01105 () | 233691..234521 | - | 831 | Protein_206 | hypothetical protein | VF |
| SFV_RS01110 () | 234508..235422 | - | 915 | Protein_207 | type VI secretion system-associated protein TagK | - |
| SFV_RS01120 () | 235520..236748 | + | 1229 | WP_171527697.1 | IS3 family transposase IS2 | Transposase |
| SFV_RS28425 () | 236805..237092 | - | 288 | WP_000343116.1 | hypothetical protein | - |
| SFV_RS28430 () | 237174..237323 | - | 150 | Protein_210 | lysis protein | - |
| SFV_RS01135 () | 237311..237778 | - | 468 | WP_011587187.1 | lysis protein | - |
| SFV_RS01140 () | 237775..238308 | - | 534 | WP_001274721.1 | lysozyme | - |
| SFV_RS01145 () | 238374..239004 | - | 631 | Protein_213 | hypothetical protein | - |
| SFV_RS01150 () | 239008..239223 | - | 216 | WP_000839566.1 | class II holin family protein | - |
| SFV_RS01155 () | 239978..241117 | - | 1140 | WP_000028982.1 | hypothetical protein | - |
| SFV_RS01160 () | 241219..241629 | - | 411 | WP_000028498.1 | hypothetical protein | - |
| SFV_RS01165 () | 241757..241951 | - | 195 | WP_000184027.1 | hypothetical protein | - |
| SFV_RS01180 () | 242362..243531 | + | 1170 | Protein_218 | IS3 family transposase | - |
| SFV_RS01185 () | 243525..244589 | + | 1065 | WP_005104848.1 | terminase large subunit | - |
| SFV_RS01190 () | 244590..246755 | + | 2166 | WP_000752837.1 | portal protein | - |
| SFV_RS01195 () | 246769..247680 | + | 912 | WP_000373010.1 | scaffold protein | - |
| SFV_RS01200 () | 247680..248975 | + | 1296 | WP_001196943.1 | coat protein | - |
| SFV_RS01205 () | 249020..249244 | + | 225 | WP_001595516.1 | hypothetical protein | - |
| SFV_RS01210 () | 249222..249722 | + | 501 | WP_001054834.1 | DNA recombination protein RmuC | - |
| SFV_RS01215 () | 249723..251141 | + | 1419 | WP_001122375.1 | packaged DNA stabilization protein gp10 | - |
| SFV_RS01220 () | 251141..251989 | + | 849 | WP_000785548.1 | Packaged DNA stabilization protein gp26 | - |
| SFV_RS01225 () | 251989..252444 | + | 456 | WP_000614030.1 | DUF2824 family protein | - |
| SFV_RS01230 () | 252447..253139 | + | 693 | WP_000964882.1 | DNA transfer protein | - |
| SFV_RS01235 () | 253149..254480 | + | 1332 | WP_000246915.1 | phage DNA ejection protein | - |
| SFV_RS01240 () | 254481..256211 | + | 1731 | WP_005104857.1 | lytic transglycosylase domain-containing protein | - |
| SFV_RS01250 () | 256337..257550 | + | 1214 | WP_171527698.1 | IS3 family transposase IS629 | Transposase |
| SFV_RS26890 () | 257599..258371 | - | 773 | Protein_232 | IS3 family transposase ISSd1 | Transposase |
| SFV_RS01265 () | 258436..258855 | + | 420 | Protein_233 | terminase large subunit | - |
| SFV_RS01270 () | 258867..259049 | + | 183 | WP_000605608.1 | hypothetical protein | - |
| SFV_RS01275 () | 259049..260290 | + | 1242 | WP_000466262.1 | phage portal protein | - |
| SFV_RS01280 () | 260268..260918 | + | 651 | WP_005104861.1 | HK97 family phage prohead protease | - |
| SFV_RS01285 () | 260933..262138 | + | 1206 | WP_000257491.1 | phage major capsid protein | - |
| SFV_RS01290 () | 262188..262388 | + | 201 | WP_000601360.1 | hypothetical protein | - |
| SFV_RS01295 () | 262391..262714 | + | 324 | WP_000927722.1 | head-tail connector protein | - |
| SFV_RS01300 () | 262711..263121 | + | 411 | WP_000702404.1 | phage head closure protein | - |
| SFV_RS01305 () | 263096..263602 | + | 507 | WP_000235781.1 | hypothetical protein | - |
| SFV_RS01310 () | 263599..264159 | + | 561 | WP_000779279.1 | hypothetical protein | - |
| SFV_RS01315 () | 264168..264338 | + | 171 | WP_000497751.1 | DUF2635 domain-containing protein | - |
| SFV_RS01320 () | 264322..265818 | + | 1497 | WP_000155706.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| SFV_RS01325 () | 265818..266174 | + | 357 | WP_000090997.1 | phage tail tube protein | - |
| SFV_RS01330 () | 266174..266443 | + | 270 | WP_000661054.1 | phage tail assembly protein | - |
| SFV_RS01335 () | 266585..268420 | + | 1836 | WP_000807221.1 | phage tail tape measure protein | - |
| SFV_RS01340 () | 268481..269809 | + | 1329 | WP_005104873.1 | DNA circularization N-terminal domain-containing protein | - |
| SFV_RS01345 () | 269806..270885 | + | 1080 | WP_000999531.1 | hypothetical protein | - |
| SFV_RS01350 () | 270885..271433 | + | 549 | WP_001259069.1 | phage baseplate assembly protein V | - |
| SFV_RS01355 () | 271433..271858 | + | 426 | WP_000424747.1 | phage GP46 family protein | - |
| SFV_RS01360 () | 271845..272903 | + | 1059 | WP_000785321.1 | baseplate J/gp47 family protein | - |
| SFV_RS01365 () | 272894..273478 | + | 585 | WP_000383571.1 | YmfQ family protein | - |
| SFV_RS01370 () | 273482..274132 | + | 651 | WP_024260222.1 | hypothetical protein | - |
| SFV_RS01375 () | 274104..274544 | + | 441 | WP_024260223.1 | tail assembly chaperone | - |
| SFV_RS01380 () | 274667..275492 | - | 826 | Protein_256 | glucosyl transferase | - |
| SFV_RS01385 () | 275917..276840 | - | 924 | WP_000703656.1 | Prophage bactoprenol glucosyl transferase | VF |
| SFV_RS01390 () | 276837..277199 | - | 363 | WP_000915848.1 | GtrA family protein | - |
| SFV_RS01395 () | 277461..278621 | - | 1161 | WP_004014228.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| SFV_RS24795 () | 278513..278845 | - | 333 | Protein_260 | helix-turn-helix domain-containing protein | - |
| SFV_RS01400 () | 278936..279280 | - | 345 | WP_024259156.1 | hypothetical protein | - |
| SFV_RS01405 () | 279307..279474 | - | 168 | WP_000545714.1 | hypothetical protein | - |
| SFV_RS01410 () | 279662..280501 | - | 840 | WP_000208039.1 | DUF551 domain-containing protein | - |
| SFV_RS01415 () | 280503..281159 | - | 657 | WP_000034222.1 | ead/Ea22-like family protein | - |
| SFV_RS01420 () | 281146..281463 | - | 318 | WP_000156545.1 | hypothetical protein | - |
| SFV_RS01425 () | 281460..281922 | - | 463 | Protein_266 | hypothetical protein | - |
| SFV_RS01430 () | 281919..282083 | - | 165 | WP_001253248.1 | DUF2737 family protein | - |
| SFV_RS01435 () | 282100..282414 | - | 315 | WP_000753554.1 | hypothetical protein | - |
| SFV_RS01440 () | 282426..282908 | - | 483 | WP_000041329.1 | siphovirus Gp157 family protein | - |
| SFV_RS01445 () | 282892..283794 | - | 903 | WP_000065843.1 | recombinase RecT | - |
| SFV_RS01450 () | 283791..284099 | - | 309 | WP_000604111.1 | hypothetical protein | - |
| SFV_RS24445 () | 284374..285071 | + | 698 | Protein_272 | IS1 family transposase IS1X2 | Transposase |
| SFV_RS24805 () | 285379..285558 | - | 180 | WP_000213971.1 | antirestriction Ral family protein | - |
| SFV_RS01465 () | 285825..286307 | + | 483 | WP_000281856.1 | superinfection exclusion B family protein | - |
| SFV_RS01470 () | 286308..286631 | - | 324 | WP_000340005.1 | antitermination protein N | - |
| SFV_RS28435 () | 286718..286882 | - | 165 | WP_171527699.1 | hypothetical protein | - |
| SFV_RS01475 () | 286936..287340 | - | 405 | WP_000618042.1 | hypothetical protein | - |
| SFV_RS01480 () | 287337..287969 | - | 633 | WP_000028392.1 | LexA family transcriptional regulator | - |
| SFV_RS01485 () | 288073..288288 | + | 216 | WP_001194218.1 | helix-turn-helix domain-containing protein | - |
| SFV_RS01490 () | 288369..289715 | - | 1347 | WP_011069251.1 | IS4 family transposase IS4 | Transposase |
| SFV_RS01495 () | 289847..290125 | + | 279 | WP_001177656.1 | lambda phage CII family protein | - |
| SFV_RS28440 () | 290160..290321 | + | 162 | WP_000166961.1 | hypothetical protein | - |
| SFV_RS01500 () | 290308..291132 | + | 825 | WP_000539335.1 | hypothetical protein | - |
| SFV_RS01505 () | 291122..292558 | + | 1437 | WP_000131484.1 | AAA family ATPase | - |
| SFV_RS01510 () | 292635..293075 | + | 441 | WP_000736913.1 | recombination protein NinB | - |
| SFV_RS01515 () | 293072..293248 | + | 177 | WP_001254255.1 | NinE family protein | - |
| SFV_RS01520 () | 293251..293652 | + | 402 | WP_000924599.1 | hypothetical protein | - |
| SFV_RS01525 () | 293612..293821 | + | 210 | WP_077881952.1 | protein ninF | - |
| SFV_RS01530 () | 293814..294536 | + | 723 | WP_001003997.1 | DNA-binding protein | - |
| SFV_RS01535 () | 294536..294826 | + | 291 | WP_000002254.1 | DUF1364 domain-containing protein | - |
| SFV_RS01540 () | 294823..295185 | + | 363 | WP_001008210.1 | RusA family crossover junction endodeoxyribonuclease | - |
| SFV_RS01545 () | 295182..295370 | + | 189 | WP_000994515.1 | protein ninH | - |
| SFV_RS01550 () | 295367..295990 | + | 624 | WP_001235461.1 | antitermination protein | - |
| SFV_RS01555 () | 296659..296982 | + | 324 | WP_000783734.1 | phage holin, lambda family | - |
| SFV_RS01560 () | 296966..297443 | + | 478 | Protein_295 | glycoside hydrolase family protein | - |
| SFV_RS01565 () | 297440..297877 | + | 438 | WP_005104933.1 | lysis protein | - |
| SFV_RS01570 () | 298079..298600 | + | 522 | WP_001028466.1 | KilA-N domain-containing protein | - |
| SFV_RS01580 () | 299117..300273 | + | 1157 | WP_094081558.1 | IS3 family transposase IS600 | Transposase |
| SFV_RS01585 () | 300319..300675 | + | 357 | Protein_299 | IS91 family transposase ISTha3 | Transposase |
| SFV_RS01595 () | 300880..302133 | - | 1254 | WP_000893267.1 | glutamate-5-semialdehyde dehydrogenase | - |
| SFV_RS01600 () | 302145..303248 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| SFV_RS01605 () | 303439..304136 | - | 698 | Protein_302 | IS1 family transposase IS1X2 | Transposase |
| SFV_RS01615 () | 304312..305367 | + | 1056 | WP_000749864.1 | phosphoporin PhoE | - |
| SFV_RS01620 () | 305406..305807 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| SFV_RS01625 () | 305865..307109 | - | 1245 | WP_000189558.1 | esterase FrsA | - |
| - () | 306525..306605 | - | 81 | NuclAT_9 | - | - |
| - () | 306525..306605 | - | 81 | NuclAT_9 | - | - |
| - () | 306525..306605 | - | 81 | NuclAT_9 | - | - |
| - () | 306525..306605 | - | 81 | NuclAT_9 | - | - |
| SFV_RS01630 () | 307201..307659 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| SFV_RS01635 () | 307921..309378 | + | 1458 | WP_001293029.1 | cytosol nonspecific dipeptidase | - |
| SFV_RS01640 () | 309435..310049 | - | 615 | Protein_308 | peptide chain release factor H | - |
| SFV_RS01645 () | 310111..311154 | - | 1044 | WP_005060486.1 | RNA ligase RtcB family protein | - |
| SFV_RS01650 () | 311400..311852 | - | 453 | WP_001059862.1 | GNAT family N-acetyltransferase | - |
| SFV_RS01655 () | 311862..312260 | - | 399 | WP_001263491.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| SFV_RS01660 () | 312263..312556 | - | 294 | WP_000554759.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| SFV_RS01665 () | 312608..313663 | - | 1056 | WP_001226172.1 | DNA polymerase IV | - |
| SFV_RS01670 () | 313734..314519 | - | 786 | WP_000207560.1 | Chemotaxis protein LafU | VF |
| SFV_RS01675 () | 314491..316203 | + | 1713 | Protein_315 | Flagellar biosynthesis protein FlhA | VF |
| SFV_RS01680 () | 316420..316917 | - | 498 | WP_000006250.1 | transposase | - |
| SFV_RS01685 () | 317093..317614 | - | 522 | Protein_317 | hypothetical protein | VF |
| SFV_RS01690 () | 317998..318738 | + | 741 | WP_001225677.1 | murein L,D-transpeptidase | - |
| SFV_RS01695 () | 318709..319476 | - | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
| SFV_RS01700 () | 319682..320260 | - | 579 | WP_024260225.1 | D-sedoheptulose 7-phosphate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|