MGE detailed information
MGE type: Prophage MGE length: 38363 bp
Accession: NC_008258 Location: 1567690..1606052 Organism: Shigella flexneri 5 str. 8401 Replicon: chromosome
Accession: NC_008258 Location: 1567690..1606052 Organism: Shigella flexneri 5 str. 8401 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SFV_RS08510 () | 1564352..1565998 | - | 1647 | WP_011587223.1 | medium-chain fatty-acid--CoA ligase | - |
| SFV_RS08515 () | 1566055..1566348 | - | 294 | WP_000081083.1 | ferredoxin family protein | - |
| SFV_RS08520 () | 1566345..1567634 | - | 1290 | WP_001278524.1 | FAD-dependent oxidoreductase | - |
| SFV_RS08525 () | 1567690..1568628 | - | 939 | WP_000080679.1 | electron transfer flavoprotein subunit alpha | - |
| SFV_RS08530 () | 1568648..1569412 | - | 765 | WP_000692129.1 | electron transfer flavoprotein | - |
| SFV_RS08540 () | 1569734..1570234 | + | 501 | WP_000284792.1 | cupin domain-containing protein | - |
| SFV_RS08545 () | 1570268..1570965 | + | 698 | Protein_1570 | IS1 family transposase IS1X2 | Transposase |
| SFV_RS24470 () | 1570959..1571126 | - | 168 | WP_005062520.1 | hypothetical protein | - |
| SFV_RS08555 () | 1571528..1572289 | - | 762 | WP_000060450.1 | acid stress response transcriptional regulator YdeO | - |
| SFV_RS08560 () | 1572357..1572560 | - | 204 | WP_000543383.1 | two-component system connector SafA | - |
| SFV_RS08565 () | 1572808..1575087 | - | 2280 | WP_000726665.1 | acid resistance putative oxidoreductase YdeP | - |
| SFV_RS08570 () | 1575421..1576170 | - | 750 | Protein_1575 | Type 1 fimbrin D-mannose specific adhesin | VF |
| SFV_RS08580 () | 1576226..1576923 | + | 698 | Protein_1576 | IS1 family transposase IS1X2 | Transposase |
| SFV_RS08585 () | 1576941..1577819 | + | 879 | Protein_1577 | IS3 family transposase IS600 | Transposase |
| SFV_RS08590 () | 1577844..1578023 | - | 180 | WP_000372594.1 | class II holin family protein | - |
| SFV_RS28510 () | 1578173..1578334 | - | 162 | WP_001323614.1 | hypothetical protein | - |
| SFV_RS08595 () | 1578331..1578519 | - | 189 | WP_000874243.1 | DUF1737 domain-containing protein | - |
| SFV_RS08600 () | 1578779..1579114 | + | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| SFV_RS28005 () | 1579395..1579503 | - | 109 | Protein_1582 | DUF3927 family protein | - |
| SFV_RS08625 () | 1580423..1581244 | - | 822 | Protein_1583 | antitermination protein | - |
| SFV_RS08630 () | 1581259..1581615 | - | 357 | WP_000904111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| SFV_RS08635 () | 1581628..1582678 | - | 1051 | Protein_1585 | DUF968 domain-containing protein | - |
| SFV_RS08640 () | 1582680..1582958 | - | 279 | Protein_1586 | hypothetical protein | - |
| SFV_RS08645 () | 1583025..1583276 | - | 252 | WP_000980987.1 | hypothetical protein | - |
| SFV_RS08650 () | 1583494..1583649 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| SFV_RS08655 () | 1583721..1584008 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| SFV_RS08660 () | 1584008..1584247 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| SFV_RS25420 () | 1584272..1584577 | + | 306 | WP_071818640.1 | hypothetical protein | - |
| SFV_RS08675 () | 1585792..1586811 | + | 1020 | Protein_1593 | MHS family MFS transporter YdfJ | - |
| SFV_RS08680 () | 1586900..1588360 | + | 1461 | WP_000527766.1 | mannitol dehydrogenase family protein | - |
| SFV_RS08685 () | 1588396..1588599 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| SFV_RS08690 () | 1588777..1589415 | - | 639 | WP_011069375.1 | DNA-binding transcriptional regulator YdfH | - |
| SFV_RS08695 () | 1589552..1590298 | - | 747 | WP_011069376.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| SFV_RS08700 () | 1590435..1592480 | + | 2046 | WP_005068122.1 | peptidyl-dipeptidase Dcp | - |
| SFV_RS08705 () | 1592525..1593043 | - | 519 | WP_001024562.1 | 2-oxo-tetronate isomerase | - |
| SFV_RS08710 () | 1593319..1593543 | + | 225 | Protein_1600 | YdeI family stress tolerance OB fold protein | - |
| SFV_RS08720 () | 1593609..1594765 | + | 1157 | Protein_1601 | IS3 family transposase IS600 | Transposase |
| SFV_RS24480 () | 1595603..1597059 | - | 1457 | Protein_1602 | molybdopterin-dependent oxidoreductase | - |
| SFV_RS08740 () | 1597258..1597563 | - | 306 | WP_005050191.1 | DUF1161 domain-containing protein | - |
| SFV_RS08745 () | 1597671..1598381 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| SFV_RS08750 () | 1598384..1598913 | - | 530 | Protein_1605 | spermidine N1-acetyltransferase | - |
| SFV_RS08755 () | 1598979..1599320 | - | 342 | WP_000705197.1 | DUF1283 family protein | - |
| SFV_RS08760 () | 1599455..1599781 | + | 327 | WP_001295395.1 | YnfA family protein | - |
| SFV_RS08765 () | 1599987..1601201 | + | 1215 | WP_005105455.1 | starvation-sensing protein RspA | - |
| SFV_RS25450 () | 1601272..1601966 | + | 695 | Protein_1609 | IS3 family transposase | - |
| SFV_RS08775 () | 1601978..1603098 | - | 1121 | Protein_1610 | IS3 family transposase IS2 | Transposase |
| SFV_RS08785 () | 1603315..1604268 | - | 954 | WP_000154339.1 | transcriptional regulator LsrR | - |
| SFV_RS08790 () | 1604517..1606052 | + | 1536 | WP_001194877.1 | Autoinducer 2 import ATP-binding protein LsrA | VF |
| SFV_RS08795 () | 1606046..1607074 | + | 1029 | WP_000911162.1 | autoinducer 2 ABC transporter permease LsrC | - |
| SFV_RS08800 () | 1607074..1608066 | + | 993 | WP_001222721.1 | autoinducer 2 ABC transporter permease LsrD | - |
| SFV_RS08805 () | 1608078..1609101 | + | 1024 | Protein_1615 | autoinducer 2 ABC transporter substrate-binding protein LsrB | - |
| SFV_RS28515 () | 1609128..1609244 | + | 117 | Protein_1616 | 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase LsrF | - |
| SFV_RS08815 () | 1609316..1610544 | + | 1229 | WP_165442258.1 | IS3-like element IS2 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|