MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 70299 bp
Accession: NC_008122 Location: 1..70299 Organism: Yersinia pestis Antiqua Replicon: plasmid pCD
Accession: NC_008122 Location: 1..70299 Organism: Yersinia pestis Antiqua Replicon: plasmid pCD
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YPA_RS22350 () | 88..1110 | + | 1023 | WP_000255944.1 | IS21 family transposase IS100kyp | Transposase |
| YPA_RS22355 () | 1107..1889 | + | 783 | WP_001317493.1 | IS21 family transposase IS100kyp | Transposase |
| YPA_RS22360 () | 1962..2174 | - | 213 | Protein_3 | IS3 family transposase ISEca11 | Transposase |
| YPA_RS22365 () | 2722..3069 | - | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| YPA_RS22370 () | 3294..3959 | - | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| YPA_RS22375 () | 3905..4534 | - | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| YPA_RS22380 () | 4534..5268 | - | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| YPA_RS22385 () | 5275..5622 | - | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| YPA_RS22390 () | 5623..6120 | - | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| YPA_RS22395 () | 6117..6464 | - | 348 | WP_002229801.1 | Putative Yop proteins translocation protein G | VF |
| YPA_RS22400 () | 6466..6729 | - | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| YPA_RS22405 () | 6730..6930 | - | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| YPA_RS22410 () | 6927..8186 | - | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| YPA_RS22415 () | 8183..10006 | - | 1824 | WP_002212923.1 | Type 3 secretion system secretin | VF |
| YPA_RS22420 () | 10012..10425 | - | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| YPA_RS22425 () | 10651..10749 | - | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| YPA_RS22430 () | 10828..11643 | - | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| YPA_RS22435 () | 11767..12162 | - | 396 | WP_002222527.1 | Type 3 secretion system pilotin | VF |
| YPA_RS22440 () | 12738..13802 | - | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| YPA_RS22445 () | 13802..14587 | - | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| YPA_RS22450 () | 14584..14850 | - | 267 | WP_002212945.1 | Surface presentation of antigens protein SpaQ | VF |
| YPA_RS22455 () | 14852..15505 | - | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| YPA_RS22460 () | 15502..16425 | - | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| YPA_RS22465 () | 16422..17789 | - | 1368 | WP_002212950.1 | hypothetical protein | VF |
| YPA_RS22470 () | 17789..18253 | - | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| YPA_RS22475 () | 18250..19569 | - | 1320 | WP_002212955.1 | putative ATP synthase YscN | VF |
| YPA_RS22480 () | 19767..20648 | + | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| YPA_RS22485 () | 20629..20907 | + | 279 | WP_002212965.1 | Protein TyeA | VF |
| YPA_RS22490 () | 20894..21265 | + | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| YPA_RS22495 () | 21262..21630 | + | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| YPA_RS22500 () | 21627..21971 | + | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| YPA_RS22505 () | 21958..24072 | + | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| YPA_RS22510 () | 24069..24509 | + | 441 | WP_002220918.1 | hypothetical protein | VF |
| YPA_RS22515 () | 24551..24838 | + | 288 | WP_002212973.1 | hypothetical protein | VF |
| YPA_RS22520 () | 24840..25820 | + | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| YPA_RS22525 () | 25833..26339 | + | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| YPA_RS22530 () | 26317..27522 | + | 1206 | WP_002212985.1 | Protein YopB | VF |
| YPA_RS22535 () | 27541..28461 | + | 921 | WP_002212987.1 | Protein YopD | VF |
| YPA_RS24725 () | 28929..29566 | - | 638 | Protein_39 | IS6 family transposase | - |
| YPA_RS22545 () | 29587..29796 | + | 210 | WP_002229781.1 | hypothetical protein | - |
| YPA_RS22550 () | 30190..31419 | + | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| YPA_RS22555 () | 31462..31779 | - | 318 | Protein_42 | IS256 family transposase ISSod4 | Transposase |
| YPA_RS25315 () | 31661..31906 | - | 246 | WP_116442925.1 | transposase | - |
| YPA_RS24275 () | 31909..32127 | + | 219 | Protein_44 | IS6 family transposase | - |
| YPA_RS22560 () | 32655..33074 | - | 420 | WP_002222515.1 | hypothetical protein | - |
| YPA_RS24280 () | 33092..33373 | - | 282 | Protein_46 | DDE-type integrase/transposase/recombinase | - |
| YPA_RS22570 () | 33779..34177 | - | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| YPA_RS22575 () | 34177..35145 | - | 969 | WP_002213006.1 | Cysteine protease YopT | VF |
| YPA_RS22580 () | 35645..36193 | + | 549 | WP_002213007.1 | hypothetical protein | VF |
| YPA_RS24730 () | 36352..36645 | + | 294 | Protein_50 | IS3 family transposase | - |
| YPA_RS22585 () | 36791..37420 | + | 630 | WP_002229770.1 | hypothetical protein | - |
| YPA_RS25320 () | 37527..38672 | + | 1146 | Protein_52 | IS3 family transposase | - |
| YPA_RS22605 () | 39432..40598 | + | 1167 | WP_002220902.1 | hypothetical protein | VF |
| YPA_RS22610 () | 40595..41560 | + | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| YPA_RS25445 () | 41720..41956 | + | 237 | WP_154020274.1 | hypothetical protein | - |
| YPA_RS25630 () | 42105..42278 | - | 174 | WP_002213357.1 | hypothetical protein | - |
| YPA_RS24740 () | 42364..42656 | + | 293 | Protein_57 | IS6 family transposase ISEas1 | Transposase |
| YPA_RS22615 () | 42822..43064 | + | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| YPA_RS22620 () | 43057..43356 | + | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| YPA_RS22625 () | 43496..44155 | - | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| YPA_RS22630 () | 44349..44741 | + | 393 | WP_002213403.1 | YopE regulator | VF |
| YPA_RS22635 () | 44804..45448 | - | 645 | Protein_62 | IS3 family transposase ISYen3 | Transposase |
| YPA_RS22645 () | 45551..46723 | + | 1173 | WP_002220893.1 | IS21 family transposase IS21 | Transposase |
| YPA_RS22650 () | 46723..47120 | + | 398 | Protein_64 | IS21 family transposase IS21 | Transposase |
| YPA_RS22655 () | 47496..47921 | + | 426 | WP_002213267.1 | hypothetical protein | VF |
| YPA_RS22670 () | 49268..49597 | - | 330 | WP_002229829.1 | hypothetical protein | - |
| YPA_RS22675 () | 49736..50200 | - | 465 | WP_002224338.1 | hypothetical protein | - |
| YPA_RS22680 () | 50219..50770 | - | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| YPA_RS22685 () | 50934..53249 | + | 2316 | WP_002220934.1 | Tn3 family transposase ISEc63 | Transposase |
| YPA_RS22690 () | 53282..53632 | - | 351 | Protein_71 | IS3 family transposase IS1351 | Transposase |
| YPA_RS24320 () | 54232..55535 | + | 1304 | Protein_72 | Adhesin YadA | VF |
| YPA_RS25635 () | 55605..55763 | + | 159 | Protein_73 | EamA family transporter | - |
| YPA_RS22710 () | 55861..56130 | - | 270 | WP_042469136.1 | transposase | - |
| YPA_RS22715 () | 56199..56657 | + | 459 | WP_002213246.1 | hypothetical protein | - |
| YPA_RS22720 () | 56829..57146 | + | 318 | WP_002213244.1 | IS3 family transposase ISKpn37 | Transposase |
| YPA_RS25330 () | 57170..57577 | + | 408 | WP_002213294.1 | IS3 family transposase ISKpn37 | Transposase |
| YPA_RS24330 () | 57560..57868 | - | 309 | Protein_78 | DDE-type integrase/transposase/recombinase | - |
| YPA_RS22730 () | 57994..58242 | + | 249 | WP_002233137.1 | hypothetical protein | VF |
| YPA_RS22735 () | 58380..58634 | + | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| YPA_RS22740 () | 58876..58950 | + | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| YPA_RS22745 () | 58931..59809 | + | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| YPA_RS24340 () | 60982..61221 | + | 240 | WP_002213291.1 | hypothetical protein | - |
| YPA_RS24750 () | 61399..61711 | + | 313 | Protein_84 | IS3 family transposase ISKpn37 | Transposase |
| YPA_RS22755 () | 61967..62416 | + | 450 | WP_002229809.1 | hypothetical protein | VF |
| YPA_RS22760 () | 62424..64622 | + | 2199 | WP_002213290.1 | Protein kinase YpkA | VF |
| YPA_RS22765 () | 65018..65884 | + | 867 | WP_002213287.1 | Effector protein YopJ | VF |
| YPA_RS22770 () | 66470..67048 | - | 579 | Protein_88 | IS3 family transposase ISYpe1 | Transposase |
| YPA_RS22775 () | 67051..67284 | + | 234 | Protein_89 | transposase domain-containing protein | - |
| YPA_RS22780 () | 67567..68973 | + | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| YPA_RS24355 () | 69194..69466 | - | 273 | Protein_91 | transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|