MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 32414 bp
Accession: NC_007777 Location: 446983..479396 Organism: Frankia sp. CcI3 Replicon: chromosome
Accession: NC_007777 Location: 446983..479396 Organism: Frankia sp. CcI3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FRANCCI3_RS01855 () | 442980..443384 | + | 405 | WP_011434841.1 | YccF domain-containing protein | - |
| FRANCCI3_RS23090 () | 443682..446747 | + | 3066 | WP_011434842.1 | diguanylate cyclase | - |
| FRANCCI3_RS01870 () | 446983..448716 | + | 1734 | WP_011434843.1 | ABC transporter ATP-binding protein/permease | - |
| FRANCCI3_RS01875 () | 448713..450674 | + | 1962 | WP_011434844.1 | Fatty acid ABC transporter ATP-binding/permease protein | VF |
| FRANCCI3_RS01880 () | 450781..452013 | - | 1233 | WP_035909880.1 | ABC transporter substrate-binding protein | - |
| FRANCCI3_RS01885 () | 452158..454236 | + | 2079 | WP_011434846.1 | ABC transporter permease | - |
| FRANCCI3_RS01890 () | 454257..455849 | + | 1593 | WP_108913715.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| FRANCCI3_RS25835 () | 456088..456336 | - | 249 | WP_162238919.1 | hypothetical protein | - |
| FRANCCI3_RS01895 () | 456233..458050 | + | 1818 | WP_085949858.1 | phosphomethylpyrimidine synthase ThiC | - |
| FRANCCI3_RS01900 () | 458307..458636 | + | 330 | WP_011434849.1 | ABATE domain-containing protein | - |
| FRANCCI3_RS01905 () | 458676..458921 | + | 246 | WP_011434850.1 | helix-turn-helix transcriptional regulator | - |
| FRANCCI3_RS26615 () | 458918..459076 | + | 159 | WP_023840839.1 | hypothetical protein | - |
| FRANCCI3_RS01910 () | 459519..459758 | + | 240 | WP_011434851.1 | DUF433 domain-containing protein | - |
| FRANCCI3_RS01915 () | 459755..459958 | + | 204 | Protein_392 | hypothetical protein ; Integrase | Integrase |
| FRANCCI3_RS23095 () | 460203..460688 | + | 486 | WP_011434853.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| FRANCCI3_RS01925 () | 460759..461151 | + | 393 | WP_011434854.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FRANCCI3_RS01930 () | 461148..461462 | + | 315 | WP_011434855.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| FRANCCI3_RS01935 () | 461909..463168 | + | 1260 | Protein_396 | transposase | - |
| FRANCCI3_RS01940 () | 463192..464274 | - | 1083 | WP_052154563.1 | ISAs1 family transposase IS1629 | Transposase |
| FRANCCI3_RS01945 () | 464725..466224 | + | 1500 | WP_108913866.1 | hypothetical protein ; Integrase | Integrase |
| FRANCCI3_RS23950 () | 467614..468570 | + | 957 | WP_200923140.1 | cupin | - |
| FRANCCI3_RS01950 () | 468504..469370 | + | 867 | WP_035912887.1 | aldo/keto reductase | - |
| FRANCCI3_RS23955 () | 469361..470026 | - | 666 | WP_202795704.1 | hypothetical protein | - |
| FRANCCI3_RS01955 () | 470346..470555 | - | 210 | WP_011434862.1 | DUF397 domain-containing protein | - |
| FRANCCI3_RS01960 () | 470552..471442 | - | 891 | WP_011434863.1 | helix-turn-helix domain-containing protein | - |
| FRANCCI3_RS23100 () | 471763..472068 | + | 306 | WP_011434864.1 | hypothetical protein | - |
| FRANCCI3_RS01970 () | 472130..472741 | + | 612 | WP_011434865.1 | ATP-binding protein | - |
| FRANCCI3_RS01975 () | 472773..473318 | + | 546 | WP_011434866.1 | hypothetical protein | - |
| FRANCCI3_RS23960 () | 473712..474535 | + | 824 | WP_202795705.1 | IS5 family transposase | - |
| FRANCCI3_RS01990 () | 474642..475115 | + | 474 | WP_083282462.1 | SAM-dependent methyltransferase | - |
| FRANCCI3_RS01995 () | 475144..476595 | + | 1452 | Protein_409 | replication initiation protein | - |
| FRANCCI3_RS02000 () | 476627..476818 | + | 192 | WP_011434870.1 | helix-turn-helix domain-containing protein | - |
| FRANCCI3_RS02005 () | 476825..477013 | - | 189 | WP_049760818.1 | hypothetical protein | - |
| FRANCCI3_RS02010 () | 477179..477478 | + | 300 | WP_011434871.1 | hypothetical protein | - |
| FRANCCI3_RS02015 () | 477715..477918 | + | 204 | WP_023839866.1 | hypothetical protein | - |
| FRANCCI3_RS02020 () | 477918..479396 | + | 1479 | WP_023839865.1 | IS91 family transposase ISSde12 | Transposase |
| FRANCCI3_RS02030 () | 480326..481576 | + | 1251 | WP_108913745.1 | MFS transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|