MGE detailed information
MGE type: IScluster/Tn MGE length: 31133 bp
Accession: NC_007608 Location: 70356..101488 Organism: Shigella boydii Sb227 Replicon: plasmid pSB4_227
Accession: NC_007608 Location: 70356..101488 Organism: Shigella boydii Sb227 Replicon: plasmid pSB4_227
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SBO_RS25240 () | 65990..68251 | - | 2262 | WP_001100761.1 | TonB-dependent receptor | - |
| SBO_RS25245 () | 68420..69196 | - | 777 | WP_000981089.1 | energy transducer TonB | - |
| SBO_RS25250 () | 69204..70079 | - | 876 | WP_001224619.1 | ChaN family lipoprotein | - |
| SBO_RS25255 () | 70356..70571 | + | 216 | Protein_84 | IS91 family transposase IS1294 | Transposase |
| SBO_RS25260 () | 70638..71984 | + | 1347 | WP_000483770.1 | IS4 family transposase IS4 | Transposase |
| SBO_RS25265 () | 71998..72288 | + | 291 | Protein_86 | IS91 family transposase | - |
| SBO_RS25270 () | 72461..72556 | - | 96 | Protein_87 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| SBO_RS28935 () | 72556..72639 | - | 84 | Protein_88 | CopG family transcriptional regulator | - |
| SBO_RS25275 () | 72669..72998 | - | 330 | Protein_89 | Tn3 family transposase TnpA_ISSod9 | Transposase |
| SBO_RS25280 () | 73083..73448 | + | 366 | WP_000124126.1 | hypothetical protein | - |
| SBO_RS25285 () | 73448..74635 | + | 1188 | WP_024258531.1 | IS91 family transposase ISEc37 | Transposase |
| SBO_RS25295 () | 75172..75459 | - | 288 | WP_000865087.1 | helix-turn-helix transcriptional regulator | - |
| SBO_RS25300 () | 75459..75770 | - | 312 | WP_000483533.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| SBO_RS25305 () | 76235..77431 | + | 1197 | WP_000140459.1 | IS110 family transposase ISEc20 | Transposase |
| SBO_RS25315 () | 77664..78361 | + | 698 | Protein_95 | IS1 family transposase IS1X2 | Transposase |
| SBO_RS25320 () | 78579..78845 | - | 267 | WP_000957717.1 | hypothetical protein | VF |
| SBO_RS25325 () | 79027..79425 | - | 399 | Protein_97 | DDE-type integrase/transposase/recombinase | - |
| SBO_RS25330 () | 79748..80875 | - | 1128 | WP_001063816.1 | IS110 family transposase ISSso6 | Transposase |
| SBO_RS28960 () | 81005..81288 | - | 284 | Protein_99 | IS110 family transposase ISSfl8 | Transposase |
| SBO_RS25345 () | 82852..83121 | - | 270 | Protein_101 | IS3 family transposase ISEc48 | Transposase |
| SBO_RS30330 () | 83236..83874 | - | 639 | WP_000607008.1 | hypothetical protein | VF |
| SBO_RS28975 () | 84072..85281 | + | 1210 | Protein_103 | IS3 family transposase | - |
| SBO_RS25375 () | 85650..87104 | + | 1455 | WP_011379078.1 | hypothetical protein | VF |
| SBO_RS28990 () | 87442..88598 | + | 1157 | WP_094096646.1 | IS3 family transposase IS600 | Transposase |
| SBO_RS29865 () | 88642..88809 | + | 168 | Protein_106 | IS3 family transposase | - |
| SBO_RS29870 () | 88827..88958 | - | 132 | Protein_107 | IS110 family transposase | - |
| SBO_RS25400 () | 90266..90913 | + | 648 | Protein_109 | IS3-like element IS911 family transposase | - |
| SBO_RS25410 () | 91598..91816 | + | 219 | WP_000813626.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| SBO_RS25415 () | 91818..92123 | + | 306 | WP_001159860.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| SBO_RS29875 () | 92147..92254 | + | 108 | WP_023592908.1 | transposase domain-containing protein | - |
| SBO_RS25425 () | 92516..94153 | + | 1638 | WP_000936800.1 | E3 ubiquitin-protein ligase ipaH9.8 | VF |
| SBO_RS25430 () | 94361..94630 | + | 270 | WP_000079956.1 | hypothetical protein | - |
| SBO_RS30625 () | 94627..94799 | + | 173 | Protein_115 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| SBO_RS25435 () | 94863..95560 | - | 698 | Protein_116 | IS1 family transposase IS1X2 | Transposase |
| SBO_RS29005 () | 95767..95883 | + | 117 | WP_004996477.1 | hypothetical protein | - |
| SBO_RS25445 () | 96247..97089 | + | 843 | WP_000931198.1 | polysaccharide deacetylase family protein | - |
| SBO_RS25910 () | 97092..98180 | + | 1089 | WP_005059238.1 | putative hexosyltransferase CapU | - |
| SBO_RS25455 () | 98185..99135 | + | 951 | WP_005059240.1 | virulence factor VirK | - |
| SBO_RS25460 () | 99200..100144 | + | 945 | WP_005027201.1 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| SBO_RS25465 () | 100298..100969 | - | 672 | Protein_122 | IS630 family transposase IS630 | Transposase |
| SBO_RS25470 () | 100985..101682 | - | 698 | Protein_123 | IS1 family transposase IS1X2 | Transposase |
| SBO_RS25480 () | 101738..102211 | + | 474 | Protein_124 | conjugal transfer protein TraD | - |
| SBO_RS25485 () | 102220..102618 | - | 399 | WP_000911318.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| SBO_RS25490 () | 102618..102845 | - | 228 | WP_000450530.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| SBO_RS29015 () | 102927..103346 | + | 420 | WP_011379081.1 | conjugative relaxase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|