MGE detailed information
MGE type: Prophage MGE length: 52596 bp
Accession: NC_007606 Location: 2201259..2253854 Organism: Shigella dysenteriae Sd197 Replicon: chromosome
Accession: NC_007606 Location: 2201259..2253854 Organism: Shigella dysenteriae Sd197 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SDY_RS11730 () | 2197708..2198709 | + | 1002 | WP_000566392.1 | low-specificity L-threonine aldolase | - |
| SDY_RS11735 () | 2198720..2200150 | + | 1431 | WP_001136565.1 | SDR family oxidoreductase | - |
| SDY_RS11740 () | 2200249..2201262 | + | 1014 | WP_005016000.1 | NAD(P)-dependent oxidoreductase | - |
| SDY_RS11745 () | 2201259..2202089 | - | 831 | WP_001255151.1 | N-acetylmuramoyl-L-alanine amidase AmiD | - |
| SDY_RS11750 () | 2202086..2202409 | - | 324 | WP_001160737.1 | heavy metal-binding domain-containing protein | - |
| SDY_RS11755 () | 2202620..2203027 | - | 408 | Protein_2276 | pentapeptide repeat-containing protein | - |
| SDY_RS11760 () | 2203083..2203780 | + | 698 | Protein_2277 | IS1 family transposase | - |
| SDY_RS11765 () | 2203796..2204317 | - | 522 | Protein_2278 | pentapeptide repeat-containing protein | - |
| SDY_RS11775 () | 2205085..2205846 | - | 762 | Protein_2280 | pentapeptide repeat-containing protein | - |
| SDY_RS11780 () | 2206170..2206864 | + | 695 | WP_134801557.1 | IS1 family transposase IS1N | Transposase |
| SDY_RS11785 () | 2207268..2207785 | + | 518 | Protein_2282 | lipoprotein | - |
| SDY_RS11790 () | 2208003..2208731 | + | 729 | WP_000027205.1 | Arginine transport ATP-binding protein ArtP | VF |
| SDY_RS11795 () | 2208749..2209480 | + | 732 | WP_000756570.1 | arginine ABC transporter substrate-binding protein | - |
| SDY_RS11800 () | 2209487..2210203 | + | 717 | WP_001001693.1 | arginine ABC transporter permease ArtQ | - |
| SDY_RS11805 () | 2210203..2210871 | + | 669 | WP_000464490.1 | arginine ABC transporter permease ArtM | - |
| SDY_RS11810 () | 2211162..2211482 | + | 321 | Protein_2287 | ABC transporter arginine-binding protein 1 | VF |
| SDY_RS11815 () | 2211498..2211761 | - | 264 | Protein_2288 | IS1 family transposase IS1N | Transposase |
| SDY_RS11825 () | 2213028..2213461 | - | 434 | Protein_2290 | IS1 family transposase IS1N | Transposase |
| SDY_RS11830 () | 2213518..2213658 | - | 141 | Protein_2291 | HNH endonuclease | - |
| SDY_RS11835 () | 2213696..2214418 | - | 723 | WP_001004003.1 | DNA-binding protein | - |
| SDY_RS11840 () | 2214493..2215170 | - | 678 | WP_000957540.1 | phage antirepressor Ant | - |
| SDY_RS11845 () | 2215491..2215820 | + | 330 | WP_024258354.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| SDY_RS11850 () | 2215810..2216118 | + | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| SDY_RS11855 () | 2216115..2216336 | - | 222 | WP_001254231.1 | NinE family protein | - |
| SDY_RS11860 () | 2216333..2216743 | - | 411 | WP_000814621.1 | recombination protein NinB | - |
| SDY_RS11870 () | 2218161..2219165 | + | 1005 | Protein_2299 | Tyrosine recombinase XerC ; Integrase | Integrase |
| SDY_RS11875 () | 2219223..2219783 | - | 561 | WP_001215754.1 | DUF1175 domain-containing protein | - |
| SDY_RS11880 () | 2219780..2220121 | - | 342 | Protein_2301 | DUF2138 family protein | - |
| SDY_RS11885 () | 2220357..2222984 | - | 2628 | WP_001281279.1 | DNA topoisomerase (ATP-hydrolyzing) subunit A | - |
| SDY_RS11890 () | 2223131..2223853 | + | 723 | WP_000990765.1 | bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase | - |
| SDY_RS11895 () | 2223994..2227746 | - | 3753 | Protein_2304 | AIDA-I family autotransporter adhesin YfaL/EhaC | - |
| SDY_RS11900 () | 2228442..2230727 | + | 2286 | WP_001075157.1 | ribonucleoside-diphosphate reductase subunit alpha | - |
| SDY_RS11905 () | 2230873..2232003 | + | 1131 | WP_000332037.1 | ribonucleotide-diphosphate reductase subunit beta | - |
| SDY_RS11910 () | 2232003..2232257 | + | 255 | WP_000124825.1 | ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE | - |
| SDY_RS11915 () | 2232311..2232961 | - | 651 | Protein_2308 | lipopolysaccharide kinase InaA | - |
| SDY_RS11920 () | 2233042..2234232 | - | 1191 | WP_000660231.1 | MFS transporter | - |
| SDY_RS11925 () | 2234397..2235268 | + | 872 | Protein_2310 | LysR family transcriptional regulator | - |
| SDY_RS11930 () | 2235313..2236392 | - | 1080 | WP_000779098.1 | glycerophosphodiester phosphodiesterase | - |
| SDY_RS11935 () | 2236397..2237755 | - | 1359 | WP_000948705.1 | glycerol-3-phosphate transporter | - |
| SDY_RS11940 () | 2238028..2239656 | + | 1629 | WP_000857263.1 | anaerobic glycerol-3-phosphate dehydrogenase subunit A | - |
| SDY_RS11945 () | 2239646..2240905 | + | 1260 | WP_001209957.1 | glycerol-3-phosphate dehydrogenase subunit GlpB | - |
| SDY_RS11950 () | 2240902..2242092 | + | 1191 | WP_001000380.1 | anaerobic glycerol-3-phosphate dehydrogenase subunit C | - |
| SDY_RS11955 () | 2242285..2243211 | + | 927 | WP_000140558.1 | ISNCY family transposase ISRor2 | VF |
| SDY_RS11960 () | 2243252..2244055 | - | 804 | WP_000992971.1 | 2-keto-3-deoxy-L-rhamnonate aldolase | - |
| SDY_RS11965 () | 2244073..2245149 | - | 1077 | Protein_2318 | MFS transporter | - |
| SDY_RS11970 () | 2245207..2245904 | + | 698 | WP_134801667.1 | IS1 family transposase | - |
| SDY_RS11975 () | 2245914..2246936 | + | 1023 | WP_202944935.1 | L-rhamnonate dehydratase | - |
| SDY_RS11980 () | 2246993..2247211 | + | 219 | Protein_2321 | MFS transporter | - |
| SDY_RS11985 () | 2247227..2247924 | - | 698 | Protein_2322 | IS1 family transposase | - |
| SDY_RS11990 () | 2247980..2248177 | - | 198 | Protein_2323 | L-rhamnonate dehydratase | - |
| SDY_RS11995 () | 2248192..2248650 | - | 459 | Protein_2324 | putative HTH-type transcriptional regulator RhmR | VF |
| SDY_RS12000 () | 2248709..2249403 | + | 695 | WP_164925027.1 | IS1 family transposase IS1N | Transposase |
| SDY_RS12005 () | 2249418..2250014 | + | 597 | Protein_2326 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | VF |
| SDY_RS12010 () | 2250018..2250985 | + | 968 | Protein_2327 | undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase | - |
| SDY_RS12015 () | 2250985..2252967 | + | 1983 | Protein_2328 | Bifunctional polymyxin resistance protein ArnA | VF |
| SDY_RS12020 () | 2252964..2253854 | + | 891 | WP_000169752.1 | 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase | - |
| SDY_RS12025 () | 2253854..2255506 | + | 1653 | WP_000844007.1 | lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase | - |
| SDY_RS12030 () | 2255503..2255838 | + | 336 | WP_000638028.1 | 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE | - |
| SDY_RS12035 () | 2255838..2256224 | + | 387 | WP_000523884.1 | 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF | - |
| SDY_RS12040 () | 2256218..2256482 | - | 265 | Protein_2333 | signal transduction protein PmrD | - |
| SDY_RS12045 () | 2256592..2257947 | - | 1356 | WP_000577578.1 | o-succinylbenzoate--CoA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|