MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 80033 bp
Accession: NC_005871 Location: 1..80033 Organism: Photobacterium profundum SS9 Replicon: plasmid pPBPR1
Accession: NC_005871 Location: 1..80033 Organism: Photobacterium profundum SS9 Replicon: plasmid pPBPR1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PBPR_RS28660 () | 335..709 | + | 375 | WP_041396055.1 | TraY domain-containing protein | - |
| PBPR_RS28670 () | 1503..1775 | + | 273 | WP_011176737.1 | type IV conjugative transfer system pilin TraA | - |
| PBPR_RS30170 () | 1778..2080 | + | 303 | WP_081470453.1 | type IV conjugative transfer system protein TraL | - |
| PBPR_RS28680 () | 2091..2654 | + | 564 | WP_041396058.1 | type IV conjugative transfer system protein TraE | - |
| PBPR_RS28685 () | 2651..3385 | + | 735 | WP_011176739.1 | type-F conjugative transfer system secretin TraK | - |
| PBPR_RS28690 () | 3385..4848 | + | 1464 | WP_041396059.1 | hypothetical protein | - |
| PBPR_RS28695 () | 4860..5255 | + | 396 | WP_011176741.1 | type IV conjugative transfer system lipoprotein TraV | - |
| PBPR_RS28700 () | 5259..7847 | + | 2589 | WP_011176742.1 | type IV secretion system protein TraC | - |
| PBPR_RS28705 () | 7844..8203 | + | 360 | WP_049789067.1 | TrbI F-type domain-containing protein | - |
| PBPR_RS28710 () | 8200..8445 | + | 246 | WP_041396060.1 | hypothetical protein | - |
| PBPR_RS28715 () | 8415..9104 | + | 690 | WP_157134483.1 | type-F conjugative transfer system protein TraW | - |
| PBPR_RS28720 () | 9108..10112 | + | 1005 | WP_011176745.1 | conjugal transfer pilus assembly protein TraU | - |
| PBPR_RS28725 () | 10303..11007 | + | 705 | WP_011176746.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| PBPR_RS28730 () | 11009..12811 | + | 1803 | WP_011176747.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| PBPR_RS28735 () | 12808..13599 | + | 792 | WP_011176748.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| PBPR_RS28740 () | 13611..14051 | + | 441 | WP_011176749.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| PBPR_RS28745 () | 14048..15409 | + | 1362 | WP_041396061.1 | conjugal transfer protein TraH | - |
| PBPR_RS28750 () | 15414..18218 | + | 2805 | WP_049789068.1 | conjugal transfer mating pair stabilization protein TraG | - |
| PBPR_RS28755 () | 18222..18665 | - | 444 | WP_041396062.1 | hypothetical protein | - |
| PBPR_RS28760 () | 18779..19150 | + | 372 | WP_011176752.1 | hypothetical protein | - |
| PBPR_RS28765 () | 19147..21252 | + | 2106 | WP_011176753.1 | type IV conjugative transfer system coupling protein TraD | - |
| PBPR_RS31270 () | 21453..21698 | + | 246 | WP_172636008.1 | hypothetical protein | - |
| PBPR_RS28775 () | 21766..22164 | + | 399 | WP_041396064.1 | hypothetical protein | - |
| PBPR_RS28780 () | 22182..23318 | - | 1137 | WP_041396065.1 | hypothetical protein | - |
| PBPR_RS28785 () | 23492..29434 | + | 5943 | WP_011176756.1 | hypothetical protein | Relaxase |
| PBPR_RS28790 () | 29463..29831 | - | 369 | WP_041396066.1 | hypothetical protein | - |
| PBPR_RS28795 () | 30909..31343 | - | 435 | WP_157134485.1 | hypothetical protein | - |
| PBPR_RS28800 () | 31512..31706 | - | 195 | WP_041396068.1 | hypothetical protein | - |
| PBPR_RS31015 () | 31699..31866 | - | 168 | WP_157134486.1 | hypothetical protein | - |
| PBPR_RS28805 () | 31938..32915 | - | 978 | WP_011176759.1 | DUF1738 domain-containing protein | - |
| PBPR_RS28810 () | 33557..34747 | + | 1191 | WP_011176760.1 | ParA family protein | - |
| PBPR_RS28815 () | 34750..35835 | + | 1086 | WP_011176761.1 | ParB/RepB/Spo0J family partition protein | - |
| PBPR_RS28820 () | 36432..36779 | - | 348 | WP_011176762.1 | hypothetical protein | - |
| PBPR_RS28825 () | 36895..37692 | - | 798 | WP_081470456.1 | endonuclease | - |
| PBPR_RS28830 () | 37791..38273 | - | 483 | WP_041396069.1 | hypothetical protein | - |
| PBPR_RS28835 () | 38487..39068 | - | 582 | WP_011176765.1 | DUF2913 family protein | - |
| PBPR_RS28840 () | 43366..43674 | - | 309 | WP_011176767.1 | type I-E CRISPR-associated endoribonuclease Cas2 | - |
| PBPR_RS28845 () | 43683..44603 | - | 921 | WP_011176768.1 | type I-E CRISPR-associated endonuclease Cas1 | - |
| PBPR_RS28850 () | 44619..46091 | - | 1473 | WP_049789069.1 | type I-E CRISPR-associated protein Cse1/CasA | - |
| PBPR_RS28855 () | 46078..46713 | - | 636 | WP_157134489.1 | type I-E CRISPR-associated protein Cas5/CasD | - |
| PBPR_RS28860 () | 46753..47778 | - | 1026 | WP_011176771.1 | type I-E CRISPR-associated protein Cas7/Cse4/CasC | - |
| PBPR_RS28865 () | 47819..48235 | - | 417 | WP_011176772.1 | type I-E CRISPR-associated protein Cse2/CasB | - |
| PBPR_RS28870 () | 48251..48796 | - | 546 | WP_041396070.1 | type I-E CRISPR-associated protein Cas6/Cse3/CasE | - |
| PBPR_RS28875 () | 48841..51273 | - | 2433 | WP_157134487.1 | CRISPR-associated helicase/endonuclease Cas3 | - |
| PBPR_RS28880 () | 51938..52891 | - | 954 | WP_011176776.1 | NYN domain-containing protein | - |
| PBPR_RS28885 () | 53602..53829 | + | 228 | WP_041396071.1 | hypothetical protein | - |
| PBPR_RS28890 () | 54037..56025 | + | 1989 | WP_041396072.1 | AAA family ATPase | - |
| PBPR_RS28895 () | 56032..57750 | + | 1719 | WP_011176778.1 | ATP-dependent helicase | - |
| PBPR_RS28900 () | 57943..58203 | - | 261 | WP_041396073.1 | hypothetical protein | - |
| PBPR_RS31020 () | 58725..58982 | - | 258 | WP_157134488.1 | hypothetical protein | - |
| PBPR_RS28910 () | 59286..59594 | - | 309 | WP_011176781.1 | hypothetical protein | - |
| PBPR_RS28915 () | 59613..59972 | - | 360 | WP_011176782.1 | hypothetical protein | - |
| PBPR_RS28920 () | 60886..61068 | + | 183 | WP_041396075.1 | hypothetical protein | - |
| PBPR_RS28925 () | 61198..61812 | + | 615 | WP_011176783.1 | class I SAM-dependent methyltransferase | - |
| PBPR_RS30185 () | 61899..62513 | - | 615 | Protein_55 | IS5 family transposase ISLlo3 | Transposase |
| PBPR_RS28935 () | 63086..63322 | - | 237 | WP_041396076.1 | hypothetical protein | - |
| PBPR_RS28940 () | 63869..64501 | + | 633 | WP_011176786.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PBPR_RS28945 () | 64523..65036 | + | 514 | Protein_58 | IS110 family transposase ISVisp6 | Transposase |
| PBPR_RS28950 () | 65355..66380 | - | 1026 | WP_011176788.1 | hypothetical protein | VF |
| PBPR_RS28955 () | 66827..67478 | + | 652 | Protein_60 | DDE-type integrase/transposase/recombinase | - |
| PBPR_RS31025 () | 67701..67967 | - | 267 | WP_041396077.1 | hypothetical protein | - |
| PBPR_RS28965 () | 68271..70019 | + | 1749 | WP_011176791.1 | hypothetical protein | - |
| PBPR_RS28970 () | 70380..71414 | - | 1035 | WP_011176792.1 | hypothetical protein | - |
| PBPR_RS28975 () | 71507..72244 | - | 738 | WP_011176793.1 | IS6 family transposase ISPpr9 | Transposase |
| PBPR_RS28980 () | 72382..72777 | + | 396 | WP_041396078.1 | hypothetical protein | - |
| PBPR_RS28985 () | 73628..74278 | + | 651 | WP_011176795.1 | hypothetical protein | - |
| PBPR_RS28990 () | 74859..75119 | + | 261 | WP_011176796.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| PBPR_RS28995 () | 75119..75421 | + | 303 | WP_011176797.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PBPR_RS29000 () | 75589..76602 | + | 1014 | WP_011176798.1 | DNA-binding protein | - |
| PBPR_RS29005 () | 76913..77149 | - | 237 | WP_041396080.1 | DinI family protein | - |
| PBPR_RS29010 () | 77981..78841 | - | 861 | WP_049789070.1 | hypothetical protein | - |
| PBPR_RS29015 () | 79373..79657 | + | 285 | WP_011176801.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|