MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 101858 bp
Accession: NC_005244 Location: 1..101858 Organism: Pseudomonas putida ND6 Replicon: plasmid pND6-1
Accession: NC_005244 Location: 1..101858 Organism: Pseudomonas putida ND6 Replicon: plasmid pND6-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YSA_RS00015 () | 492..797 | - | 306 | WP_011600727.1 | hypothetical protein | - |
| YSA_RS00025 () | 1192..2208 | - | 1017 | WP_011154369.1 | ParB/RepB/Spo0J family partition protein | - |
| YSA_RS00030 () | 2364..3497 | - | 1134 | WP_011600725.1 | ParA family protein | - |
| YSA_RS00035 () | 3707..4186 | - | 480 | WP_011154371.1 | hypothetical protein | - |
| YSA_RS00040 () | 5212..6078 | + | 867 | WP_011154372.1 | replication initiation protein | - |
| YSA_RS00045 () | 6248..6589 | - | 342 | WP_016502326.1 | hypothetical protein | - |
| YSA_RS29765 () | 6690..7010 | - | 321 | WP_028622368.1 | hypothetical protein | - |
| YSA_RS00050 () | 7158..8660 | + | 1503 | WP_110389047.1 | ATP-dependent helicase | - |
| YSA_RS00055 () | 8720..8905 | + | 186 | WP_016502325.1 | hypothetical protein | - |
| YSA_RS00060 () | 9052..10707 | + | 1656 | Protein_10 | FAD-dependent oxidoreductase | - |
| YSA_RS00065 () | 10704..11246 | + | 543 | WP_011154375.1 | VOC family protein | - |
| YSA_RS00070 () | 11424..12353 | + | 930 | WP_011154376.1 | AraC family transcriptional regulator | - |
| YSA_RS00075 () | 12452..13903 | - | 1452 | WP_011154377.1 | aldehyde dehydrogenase | - |
| YSA_RS00080 () | 13946..15079 | - | 1134 | WP_011154378.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| YSA_RS00085 () | 15119..16057 | - | 939 | WP_011154379.1 | catechol 1,2-dioxygenase | - |
| YSA_RS00090 () | 16132..17421 | - | 1290 | Protein_16 | salicylate 1-monooxygenase | - |
| YSA_RS00095 () | 17544..18881 | - | 1338 | WP_047602749.1 | aromatic acid/H+ symport family MFS transporter | - |
| YSA_RS00100 () | 19054..19962 | - | 909 | WP_011154382.1 | formylglycine-generating enzyme family protein | - |
| YSA_RS00105 () | 19934..21652 | - | 1719 | WP_110389048.1 | arylsulfatase | - |
| YSA_RS00110 () | 21693..22445 | - | 753 | Protein_20 | alginate export family protein | - |
| YSA_RS00115 () | 22534..22941 | - | 408 | WP_009403731.1 | Cd(II)/Pb(II)-responsive transcriptional regulator | - |
| YSA_RS00120 () | 23037..23933 | + | 897 | WP_004364974.1 | cation transporter | - |
| YSA_RS00125 () | 23937..24449 | + | 513 | WP_004863699.1 | signal peptidase II | - |
| YSA_RS00130 () | 24471..25760 | + | 1290 | WP_014819629.1 | ISL3-like element ISPpu12 family transposase | - |
| YSA_RS00140 () | 26029..26789 | + | 761 | Protein_25 | OprD family outer membrane porin | - |
| YSA_RS00145 () | 26826..27095 | - | 270 | WP_033979952.1 | hypothetical protein | - |
| YSA_RS00150 () | 27231..28280 | - | 1050 | WP_011154388.1 | DNA-binding protein | - |
| YSA_RS00155 () | 28467..29477 | + | 1011 | WP_077747747.1 | tyrosine-type recombinase/integrase | - |
| YSA_RS00160 () | 29663..30250 | - | 588 | WP_011154390.1 | hypothetical protein | - |
| YSA_RS00165 () | 30474..31364 | + | 891 | WP_016969805.1 | hypothetical protein | - |
| YSA_RS00170 () | 31343..33283 | - | 1941 | WP_110389049.1 | AAA family ATPase | - |
| YSA_RS00175 () | 33389..33619 | - | 231 | WP_028619968.1 | hypothetical protein | - |
| YSA_RS00180 () | 33635..34105 | - | 471 | WP_080963864.1 | ParB N-terminal domain-containing protein | - |
| YSA_RS00185 () | 34195..35589 | - | 1395 | WP_110389050.1 | exodeoxyribonuclease VII large subunit | - |
| YSA_RS00190 () | 35576..35788 | - | 213 | WP_013100931.1 | exodeoxyribonuclease VII small subunit | - |
| YSA_RS00195 () | 35862..36491 | - | 630 | WP_110389051.1 | hypothetical protein | - |
| YSA_RS00200 () | 36813..37492 | - | 680 | Protein_37 | DUF2786 domain-containing protein | - |
| YSA_RS00205 () | 37546..38022 | - | 477 | WP_011154398.1 | hypothetical protein | - |
| YSA_RS29955 () | 38409..38669 | + | 261 | WP_156796376.1 | hypothetical protein | - |
| YSA_RS00220 () | 39452..39790 | - | 339 | WP_011154401.1 | DEAD/DEAH box helicase family protein | - |
| YSA_RS00225 () | 40049..40597 | + | 549 | WP_016971295.1 | hypothetical protein | - |
| YSA_RS00230 () | 40623..41625 | + | 1003 | Protein_42 | nucleoid-associated protein YejK | - |
| YSA_RS00235 () | 41692..42483 | - | 792 | Protein_43 | S49 family peptidase | - |
| YSA_RS00240 () | 43255..43608 | + | 354 | WP_011154405.1 | hypothetical protein | - |
| YSA_RS00245 () | 43725..43976 | + | 252 | WP_110389052.1 | hypothetical protein | - |
| YSA_RS00250 () | 44082..44531 | + | 450 | WP_011154406.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| YSA_RS00255 () | 44886..45161 | + | 276 | WP_011154407.1 | hypothetical protein | - |
| YSA_RS00260 () | 45174..45524 | + | 351 | WP_110389053.1 | hypothetical protein | - |
| YSA_RS00265 () | 45583..47316 | + | 1734 | WP_169882156.1 | DUF4942 domain-containing protein | - |
| YSA_RS00270 () | 47442..47831 | + | 390 | WP_110389054.1 | hypothetical protein | - |
| YSA_RS00275 () | 47857..48534 | + | 678 | WP_110389055.1 | GNAT family N-acetyltransferase | - |
| YSA_RS29770 () | 48696..49844 | + | 1149 | WP_011154410.1 | hypothetical protein | - |
| YSA_RS00280 () | 49870..50184 | + | 315 | WP_110389056.1 | hypothetical protein | - |
| YSA_RS00285 () | 50560..50967 | + | 408 | WP_011117396.1 | hypothetical protein | - |
| YSA_RS00290 () | 50964..52223 | + | 1260 | WP_011117397.1 | site-specific integrase | - |
| YSA_RS00295 () | 52324..52800 | - | 477 | Protein_56 | hypothetical protein | - |
| YSA_RS00300 () | 52885..53094 | - | 210 | WP_019694519.1 | hypothetical protein | - |
| YSA_RS00305 () | 53213..54163 | - | 951 | WP_181406953.1 | hypothetical protein | - |
| YSA_RS00310 () | 54342..55328 | + | 987 | WP_011117469.1 | 2Fe-2S iron-sulfur cluster binding domain-containing protein | - |
| YSA_RS00315 () | 55472..55786 | + | 315 | WP_011117470.1 | non-heme iron oxygenase ferredoxin subunit | - |
| YSA_RS00320 () | 55857..57206 | + | 1350 | WP_011154413.1 | Rieske 2Fe-2S domain-containing protein | - |
| YSA_RS00325 () | 57221..57805 | + | 585 | WP_011117401.1 | aromatic-ring-hydroxylating dioxygenase subunit beta | - |
| YSA_RS00330 () | 57874..58653 | + | 780 | WP_011117402.1 | 3-(cis-5,6-dihydroxycyclohexa-1, 3-dien-1-yl)propanoate dehydrogenase | - |
| YSA_RS00335 () | 58700..60151 | + | 1452 | WP_011117403.1 | aldehyde dehydrogenase | - |
| YSA_RS00340 () | 60179..61087 | + | 909 | WP_011117404.1 | 1,2-dihydroxynaphthalene dioxygenase | - |
| YSA_RS00345 () | 61343..61978 | + | 636 | WP_031319756.1 | outer membrane beta-barrel protein | - |
| YSA_RS00350 () | 62027..63031 | + | 1005 | WP_011117406.1 | trans-o-hydroxybenzylidenepyruvate hydratase-aldolase | - |
| YSA_RS00355 () | 63285..63884 | + | 600 | WP_011117407.1 | 2-hydroxychromene-2-carboxylate isomerase | - |
| YSA_RS00360 () | 64294..65207 | - | 914 | Protein_69 | recombinase family protein | - |
| YSA_RS00365 () | 65428..65787 | + | 360 | Protein_70 | transposase | - |
| YSA_RS00370 () | 66043..66456 | - | 414 | WP_011154418.1 | helix-turn-helix transcriptional regulator | - |
| YSA_RS00375 () | 66562..67179 | + | 618 | WP_011117411.1 | glutathione transferase GstA | - |
| YSA_RS00380 () | 67191..68255 | + | 1065 | WP_011117412.1 | alkene reductase | - |
| YSA_RS00385 () | 68639..69670 | + | 1032 | WP_011117413.1 | aldo/keto reductase | - |
| YSA_RS00400 () | 70258..70995 | - | 738 | Protein_75 | helicase | - |
| YSA_RS00405 () | 70985..71254 | - | 270 | Protein_76 | phage tail protein | - |
| YSA_RS00410 () | 71388..72299 | - | 912 | WP_011117414.1 | SdiA-regulated domain-containing protein | - |
| YSA_RS00415 () | 72346..72705 | - | 360 | WP_011117415.1 | TraR/DksA family transcriptional regulator | - |
| YSA_RS00420 () | 72705..73448 | - | 744 | WP_031319755.1 | universal stress protein | - |
| YSA_RS00425 () | 73771..74678 | - | 908 | Protein_80 | phage tail protein | - |
| YSA_RS00430 () | 74859..75773 | - | 915 | WP_011117418.1 | transcriptional regulator GcvA | - |
| YSA_RS00435 () | 76078..76851 | + | 774 | WP_011117419.1 | SDR family oxidoreductase | - |
| YSA_RS00440 () | 76925..77203 | + | 279 | Protein_83 | hypothetical protein | - |
| YSA_RS00445 () | 77343..77660 | + | 318 | WP_110389057.1 | OsmC family protein | - |
| YSA_RS00450 () | 77552..78220 | - | 669 | WP_019694526.1 | DDE-type integrase/transposase/recombinase | - |
| YSA_RS00455 () | 78217..78603 | - | 387 | WP_011154423.1 | transposase | - |
| YSA_RS00460 () | 78673..79209 | - | 537 | Protein_87 | IS30 family transposase | - |
| YSA_RS00470 () | 79430..81046 | - | 1617 | WP_011117423.1 | methyl-accepting chemotaxis protein | - |
| YSA_RS00475 () | 81283..81474 | - | 192 | WP_011117424.1 | 2-hydroxymuconate tautomerase | - |
| YSA_RS00480 () | 81529..82323 | - | 795 | WP_011117425.1 | 2-oxo-3-hexenedioate decarboxylase | - |
| YSA_RS00485 () | 82320..83360 | - | 1041 | WP_011117426.1 | 4-hydroxy-2-oxovalerate aldolase | - |
| YSA_RS00490 () | 83372..84295 | - | 924 | WP_011117427.1 | acetaldehyde dehydrogenase (acetylating) | - |
| YSA_RS00495 () | 84315..85100 | - | 786 | WP_011117428.1 | 2-oxopent-4-enoate hydratase | - |
| YSA_RS00500 () | 85112..85993 | - | 882 | WP_011117429.1 | alpha/beta fold hydrolase | - |
| YSA_RS00505 () | 86001..87461 | - | 1461 | WP_011117430.1 | 2-hydroxymuconic semialdehyde dehydrogenase | - |
| YSA_RS00510 () | 87496..88419 | - | 924 | WP_011117431.1 | catechol 2,3-dioxygenase | - |
| YSA_RS00515 () | 88440..88757 | - | 318 | WP_011117432.1 | 2Fe-2S iron-sulfur cluster binding domain-containing protein | - |
| YSA_RS29960 () | 88741..88959 | - | 219 | WP_024265233.1 | hypothetical protein | - |
| YSA_RS00525 () | 89257..90561 | - | 1305 | WP_011154425.1 | salicylate 1-monooxygenase | - |
| YSA_RS00530 () | 90605..90946 | - | 342 | WP_025999701.1 | hypothetical protein | - |
| YSA_RS00535 () | 90962..91288 | - | 327 | WP_000091614.1 | hypothetical protein | - |
| YSA_RS00540 () | 91312..91647 | - | 336 | WP_000741275.1 | hypothetical protein | - |
| YSA_RS00545 () | 91662..91997 | - | 336 | WP_001172026.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| YSA_RS00550 () | 91978..92355 | - | 378 | WP_003151133.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| YSA_RS00555 () | 92547..93149 | + | 603 | WP_010465829.1 | recombinase family protein | - |
| YSA_RS00560 () | 93133..96162 | + | 3030 | WP_010799689.1 | Tn3 family transposase | - |
| YSA_RS00565 () | 96348..97250 | + | 903 | WP_011117383.1 | HTH-type transcriptional activator NahR | - |
| YSA_RS00570 () | 97310..97689 | + | 380 | Protein_108 | IS30 family transposase | - |
| YSA_RS00580 () | 97860..98807 | + | 948 | Protein_109 | tyrosine-type recombinase/integrase | - |
| YSA_RS00590 () | 99162..100145 | - | 984 | WP_011154428.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|