MGE detailed information
MGE type: Prophage MGE length: 84015 bp
Accession: NC_004741 Location: 220393..304407 Organism: Shigella flexneri 2a str. 2457T Replicon: chromosome
Accession: NC_004741 Location: 220393..304407 Organism: Shigella flexneri 2a str. 2457T Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| S_RS01035 () | 219551..220354 | + | 804 | WP_000997046.1 | 2,5-didehydrogluconate reductase DkgB | - |
| S_RS01040 () | 220393..221739 | - | 1347 | WP_005086990.1 | IS4 family transposase IS4 | Transposase |
| S_RS01045 () | 221789..222703 | - | 915 | WP_000648578.1 | HTH-type transcriptional regulator DmlR | VF |
| S_RS01050 () | 222944..223744 | + | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| S_RS01055 () | 223822..224592 | + | 771 | WP_000211683.1 | class I SAM-dependent methyltransferase | - |
| S_RS01060 () | 224640..225986 | - | 1347 | WP_000644679.1 | Membrane-bound lytic murein transglycosylase D | VF |
| S_RS01065 () | 226058..226813 | - | 756 | WP_001052754.1 | hydroxyacylglutathione hydrolase | - |
| S_RS01070 () | 226847..227569 | + | 723 | WP_005060310.1 | class I SAM-dependent methyltransferase | - |
| S_RS01075 () | 227566..228033 | - | 468 | WP_000917883.1 | ribonuclease HI | - |
| S_RS01080 () | 228098..228829 | + | 732 | WP_001366128.1 | DNA polymerase III subunit epsilon | - |
| S_RS01090 () | 229169..230215 | - | 1047 | WP_000402248.1 | hypothetical protein | VF |
| S_RS24835 () | 230229..230788 | - | 560 | Protein_204 | hypothetical protein | VF |
| S_RS01105 () | 230785..232668 | - | 1884 | WP_000371478.1 | type VI secretion system baseplate subunit TssF | - |
| S_RS01110 () | 232684..233178 | - | 495 | WP_001276640.1 | hypothetical protein | VF |
| S_RS01115 () | 233175..234005 | - | 831 | Protein_207 | hypothetical protein | VF |
| S_RS01120 () | 233992..234906 | - | 915 | Protein_208 | type VI secretion system-associated protein TagK | - |
| S_RS01130 () | 234959..236232 | + | 1274 | WP_094081497.1 | IS3 family transposase IS2 | Transposase |
| S_RS01135 () | 236289..236576 | - | 288 | WP_000343116.1 | hypothetical protein | - |
| S_RS01145 () | 236654..237822 | + | 1169 | WP_094105670.1 | IS3 family transposase ISLad1 | Transposase |
| S_RS27470 () | 237910..238059 | - | 150 | Protein_212 | lysis protein | - |
| S_RS24610 () | 238047..238514 | - | 468 | Protein_213 | lysis protein | - |
| S_RS01160 () | 238511..239049 | - | 539 | Protein_214 | lysozyme | - |
| S_RS01165 () | 239101..239415 | - | 315 | WP_000192453.1 | YdfR family protein | - |
| S_RS01170 () | 239420..239635 | - | 216 | WP_000839578.1 | class II holin family protein | - |
| S_RS01190 () | 242014..243073 | + | 1060 | Protein_218 | terminase large subunit | - |
| S_RS01195 () | 243074..245239 | + | 2166 | WP_000752837.1 | portal protein | - |
| S_RS01200 () | 245253..246164 | + | 912 | WP_000373012.1 | scaffold protein | - |
| S_RS01205 () | 246164..247459 | + | 1296 | WP_001196950.1 | coat protein | - |
| S_RS01210 () | 247504..247734 | + | 231 | WP_005053303.1 | hypothetical protein | - |
| S_RS01215 () | 247712..248212 | + | 501 | WP_001054834.1 | DNA recombination protein RmuC | - |
| S_RS01220 () | 248212..249630 | + | 1419 | WP_001122382.1 | packaged DNA stabilization protein gp10 | - |
| S_RS01225 () | 249630..250478 | + | 849 | WP_000785540.1 | Packaged DNA stabilization protein gp26 | - |
| S_RS01230 () | 250478..250933 | + | 456 | WP_000627639.1 | DUF2824 family protein | - |
| S_RS01235 () | 250936..251628 | + | 693 | WP_000964877.1 | DNA transfer protein | - |
| S_RS01240 () | 251638..252969 | + | 1332 | WP_000246949.1 | phage DNA ejection protein | - |
| S_RS01245 () | 252970..254700 | + | 1731 | WP_005053293.1 | lytic transglycosylase domain-containing protein | - |
| S_RS24850 () | 254826..256034 | + | 1209 | Protein_230 | IS3 family transposase IS629 | Transposase |
| S_RS01270 () | 256085..256405 | - | 321 | WP_005053289.1 | phosphate starvation-inducible protein PsiF | - |
| S_RS01275 () | 256524..257939 | - | 1416 | WP_005053287.1 | alkaline phosphatase | - |
| S_RS01280 () | 258040..258300 | - | 261 | WP_000792969.1 | anti-adapter protein IraP | - |
| S_RS28205 () | 258482..258685 | - | 204 | WP_023517632.1 | hypothetical protein | - |
| S_RS01290 () | 258763..259857 | + | 1095 | WP_000413677.1 | D-alanine--D-alanine ligase | - |
| S_RS27475 () | 259881..260093 | - | 213 | WP_001599861.1 | DUF2754 domain-containing protein | - |
| S_RS01300 () | 260353..260661 | + | 309 | WP_000763148.1 | YaiY family protein | - |
| S_RS01305 () | 260720..261814 | - | 1095 | WP_000092054.1 | surface-exposed outer membrane lipoprotein YaiW | - |
| S_RS01310 () | 261827..263047 | - | 1221 | WP_001342332.1 | peptide antibiotic transporter SbmA | - |
| S_RS01320 () | 263399..264556 | + | 1158 | WP_000830735.1 | D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH | - |
| S_RS01325 () | 264557..265060 | - | 504 | WP_000953938.1 | helix-turn-helix domain-containing protein | - |
| S_RS24585 () | 265148..265675 | - | 528 | Protein_242 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| S_RS01335 () | 265695..266740 | - | 1046 | Protein_243 | IS3 family transposase ISEhe3 | Transposase |
| S_RS01360 () | 267999..268109 | - | 111 | WP_005127064.1 | IS3 family transposase ISEhe3 | Transposase |
| S_RS01365 () | 268173..268706 | - | 534 | Protein_246 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| S_RS01380 () | 270034..270402 | - | 369 | Protein_248 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| S_RS01385 () | 270926..271900 | + | 975 | WP_001295337.1 | porphobilinogen synthase | - |
| S_RS01390 () | 272006..272857 | - | 852 | WP_000004031.1 | taurine dioxygenase | - |
| S_RS01395 () | 272854..273681 | - | 828 | WP_000114607.1 | taurine ABC transporter permease TauC | - |
| S_RS01400 () | 273678..274445 | - | 768 | WP_000939367.1 | Taurine import ATP-binding protein TauB | VF |
| S_RS01405 () | 274458..275384 | - | 927 | WP_045177322.1 | taurine ABC transporter substrate-binding protein | - |
| S_RS01410 () | 275651..275845 | - | 195 | WP_077696319.1 | regulator | - |
| S_RS01415 () | 275912..276609 | - | 698 | Protein_255 | IS1 family transposase IS1X2 | Transposase |
| S_RS01420 () | 276754..277422 | + | 669 | WP_000003122.1 | hypothetical protein | - |
| S_RS01430 () | 277665..278360 | - | 696 | WP_000370403.1 | lactate utilization protein C | - |
| S_RS01435 () | 278353..279780 | - | 1428 | WP_000023933.1 | iron-sulfur cluster-binding protein | - |
| S_RS01440 () | 279791..280510 | - | 720 | WP_001102097.1 | (Fe-S)-binding protein | - |
| S_RS01450 () | 280929..281626 | + | 698 | Protein_260 | IS1 family transposase IS1X2 | Transposase |
| S_RS01455 () | 281619..282296 | + | 678 | Protein_261 | hypothetical protein | - |
| S_RS01460 () | 282293..282679 | + | 387 | WP_000667623.1 | hypothetical protein | - |
| S_RS01465 () | 282704..284917 | + | 2214 | WP_000011500.1 | hypothetical protein | VF |
| S_RS27480 () | 284940..285385 | + | 446 | Protein_264 | DcrB-related protein | - |
| S_RS01475 () | 285407..285814 | + | 408 | WP_005053237.1 | PAAR domain-containing protein | - |
| S_RS01480 () | 285811..288099 | + | 2289 | WP_000568701.1 | RHS repeat protein | - |
| S_RS01485 () | 288096..289085 | + | 990 | WP_005053234.1 | hypothetical protein | VF |
| S_RS27485 () | 289185..289388 | + | 204 | WP_128567422.1 | hypothetical protein | - |
| S_RS01490 () | 289406..289726 | + | 321 | WP_000343515.1 | hypothetical protein | - |
| S_RS24895 () | 289792..290024 | - | 233 | Protein_270 | type I toxin-antitoxin system SymE family toxin | - |
| S_RS01495 () | 290134..290904 | - | 771 | WP_001139559.1 | 2-oxoglutaramate amidase | - |
| S_RS01500 () | 291085..291531 | + | 447 | WP_005100645.1 | Ivy family C-type lysozyme inhibitor | - |
| S_RS01505 () | 291574..294018 | - | 2445 | WP_000973114.1 | Acyl-coenzyme A dehydrogenase | VF |
| S_RS01510 () | 294258..294836 | + | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| S_RS01515 () | 295042..295809 | + | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
| S_RS01520 () | 295780..296520 | - | 741 | WP_001225676.1 | murein L,D-transpeptidase | - |
| S_RS01525 () | 296904..297425 | + | 522 | Protein_277 | hypothetical protein | VF |
| S_RS01530 () | 297601..298098 | + | 498 | WP_000006251.1 | REP-associated tyrosine transposase RayT | - |
| S_RS01535 () | 298315..300027 | - | 1713 | Protein_279 | Flagellar biosynthesis protein FlhA | VF |
| S_RS01540 () | 299999..300784 | + | 786 | WP_000207560.1 | Chemotaxis protein LafU | VF |
| S_RS01545 () | 300855..301910 | + | 1056 | WP_001226172.1 | DNA polymerase IV | - |
| S_RS01550 () | 301962..302255 | + | 294 | WP_000554759.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| S_RS01555 () | 302258..302656 | + | 399 | WP_001263491.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| S_RS01560 () | 302666..303118 | + | 453 | WP_001059860.1 | GNAT family N-acetyltransferase | - |
| S_RS01565 () | 303364..304407 | + | 1044 | WP_005053205.1 | RNA ligase RtcB family protein | - |
| S_RS01570 () | 304469..305083 | + | 615 | Protein_286 | peptide chain release factor H | - |
| S_RS01575 () | 305140..306597 | - | 1458 | WP_001293030.1 | cytosol nonspecific dipeptidase | - |
| S_RS01580 () | 306859..307317 | + | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| S_RS01585 () | 307409..308653 | + | 1245 | WP_000189558.1 | esterase FrsA | - |
| - () | 307913..307993 | + | 81 | NuclAT_8 | - | - |
| - () | 307913..307993 | + | 81 | NuclAT_8 | - | - |
| - () | 307913..307993 | + | 81 | NuclAT_8 | - | - |
| - () | 307913..307993 | + | 81 | NuclAT_8 | - | - |
| S_RS01590 () | 308711..309112 | + | 402 | WP_000174678.1 | sigma factor-binding protein Crl | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|