MGE detailed information
MGE type: Prophage MGE length: 52061 bp
Accession: NC_004741 Location: 2021895..2073955 Organism: Shigella flexneri 2a str. 2457T Replicon: chromosome
Accession: NC_004741 Location: 2021895..2073955 Organism: Shigella flexneri 2a str. 2457T Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| S_RS11170 () | 2016943..2017614 | - | 672 | WP_001347103.1 | response regulator transcription factor HprR | - |
| S_RS11175 () | 2017747..2018160 | + | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| S_RS11180 () | 2018269..2019273 | + | 1005 | Protein_2030 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| S_RS11185 () | 2019274..2019909 | + | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| S_RS11190 () | 2020167..2020817 | + | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| S_RS11200 () | 2021895..2022164 | - | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| S_RS11205 () | 2022221..2022889 | + | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| S_RS11210 () | 2023205..2024848 | + | 1644 | WP_011110600.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| S_RS11220 () | 2025028..2025507 | - | 480 | Protein_2036 | DUF4376 domain-containing protein | - |
| S_RS11225 () | 2025548..2026404 | - | 857 | Protein_2037 | IS3 family transposase ISSd1 | Transposase |
| S_RS11230 () | 2026462..2027159 | + | 698 | Protein_2038 | IS1 family transposase IS1X2 | Transposase |
| S_RS24675 () | 2027252..2027734 | - | 483 | WP_000594909.1 | hypothetical protein | - |
| S_RS11240 () | 2027802..2029751 | - | 1950 | WP_000785377.1 | phage tail tape measure protein | - |
| S_RS11245 () | 2029836..2030171 | - | 336 | WP_001251340.1 | phage tail assembly protein | - |
| S_RS11250 () | 2030171..2030527 | - | 357 | WP_001062338.1 | phage tail tube protein | - |
| S_RS11255 () | 2030527..2032023 | - | 1497 | WP_000155744.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| S_RS11260 () | 2032020..2032181 | - | 162 | WP_000497744.1 | DUF2635 domain-containing protein | - |
| S_RS11265 () | 2032191..2032532 | - | 342 | Protein_2045 | hypothetical protein | - |
| S_RS11280 () | 2033797..2034609 | - | 813 | Protein_2047 | IS66 family transposase ISSfl3 | Transposase |
| S_RS11285 () | 2034606..2034956 | - | 351 | WP_005048975.1 | IS66 family transposase ISSfl3 | Transposase |
| S_RS11290 () | 2034953..2035627 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| S_RS11295 () | 2035726..2035941 | - | 216 | WP_000839572.1 | class II holin family protein | - |
| S_RS11320 () | 2036742..2037425 | - | 684 | WP_005049343.1 | antiterminator | - |
| S_RS11325 () | 2037422..2037787 | - | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| S_RS11330 () | 2037788..2038846 | - | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| S_RS26080 () | 2038848..2039126 | - | 279 | WP_011069426.1 | hypothetical protein | - |
| S_RS11340 () | 2039294..2039449 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - () | 2039461..2039519 | + | 59 | - | - | Antitoxin Detail |
| S_RS11350 () | 2040101..2040517 | - | 417 | WP_005069274.1 | hypothetical protein | - |
| S_RS11355 () | 2040544..2040684 | + | 141 | Protein_2057 | DUF4224 domain-containing protein | - |
| S_RS11360 () | 2040684..2041709 | + | 1026 | WP_000533619.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| S_RS11370 () | 2041945..2042742 | + | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| S_RS11380 () | 2043080..2044342 | + | 1263 | Protein_2060 | Prophage integrase IntA ; Integrase | Integrase |
| S_RS11395 () | 2045678..2046181 | + | 504 | WP_005063096.1 | MFS transporter | - |
| S_RS26095 () | 2046243..2047399 | + | 1157 | WP_134796890.1 | IS3 family transposase IS600 | Transposase |
| S_RS11410 () | 2047443..2047649 | + | 207 | WP_000466572.1 | hypothetical protein | - |
| S_RS11415 () | 2047751..2049205 | + | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| S_RS11420 () | 2049548..2050264 | + | 717 | WP_000532920.1 | putative transcriptional regulatory protein YeeN | VF |
| S_RS27765 () | 2050896..2052523 | - | 1628 | Protein_2067 | toxic metabolite efflux MATE transporter YeeO | - |
| S_RS11450 () | 2052641..2053591 | - | 951 | WP_001010988.1 | HTH-type transcriptional regulator Cbl | - |
| S_RS11455 () | 2053693..2054610 | - | 918 | WP_001011445.1 | nitrogen assimilation transcriptional regulator NAC | - |
| S_RS11465 () | 2055069..2056004 | - | 936 | WP_000986341.1 | L,D-transpeptidase | - |
| S_RS11470 () | 2056066..2057145 | - | 1080 | WP_001165576.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| S_RS11475 () | 2057157..2057900 | - | 744 | WP_005049317.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| S_RS11480 () | 2057897..2058406 | - | 510 | WP_000261572.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| S_RS26115 () | 2059817..2061026 | + | 1210 | Protein_2075 | IS3 family transposase IS629 | Transposase |
| S_RS11510 () | 2061404..2061550 | - | 147 | Protein_2076 | transposase domain-containing protein | - |
| S_RS11515 () | 2061604..2061786 | + | 183 | WP_001016348.1 | hypothetical protein | - |
| S_RS11520 () | 2061887..2062216 | - | 330 | WP_000450409.1 | DUF496 family protein | - |
| S_RS11525 () | 2062388..2062687 | - | 300 | WP_005088730.1 | hypothetical protein | - |
| S_RS11530 () | 2062757..2063431 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| S_RS11535 () | 2063428..2063598 | + | 171 | Protein_2081 | IS66 family transposase ISSfl3 | Transposase |
| S_RS24680 () | 2063643..2064852 | - | 1210 | Protein_2082 | IS3 family transposase IS629 | Transposase |
| S_RS28400 () | 2064908..2065087 | + | 180 | Protein_2083 | IS66 family insertion sequence element accessory protein TnpB | - |
| S_RS11560 () | 2065084..2066685 | + | 1602 | WP_011110603.1 | IS66 family transposase ISSfl3 | Transposase |
| S_RS11565 () | 2066715..2067068 | + | 354 | Protein_2085 | hypothetical protein ; Integrase | Integrase |
| S_RS11570 () | 2067120..2067495 | - | 376 | Protein_2086 | IS3 family transposase ISLad1 | Transposase |
| S_RS24685 () | 2067528..2069125 | - | 1598 | Protein_2087 | IS66-like element ISSfl3 family transposase | - |
| S_RS11585 () | 2069122..2069472 | - | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| S_RS11590 () | 2069469..2070143 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| S_RS11595 () | 2070225..2071061 | - | 837 | Protein_2090 | hypothetical protein ; Integrase | Integrase |
| S_RS11600 () | 2071243..2072667 | + | 1425 | WP_000132548.1 | exodeoxyribonuclease I | - |
| S_RS11605 () | 2072710..2072937 | - | 228 | WP_000985273.1 | sulfurtransferase TusA family protein | - |
| S_RS11610 () | 2072951..2074009 | - | 1059 | WP_000492293.1 | transport protein YeeE | - |
| S_RS11615 () | 2074188..2075546 | - | 1359 | WP_000019203.1 | putrescine/proton symporter PlaP | - |
| S_RS27785 () | 2075536..2075598 | - | 63 | WP_097433929.1 | membrane protein YoeI | - |
| S_RS11620 () | 2075759..2076742 | - | 984 | WP_000803326.1 | LysR family transcriptional regulator | - |
| S_RS11625 () | 2076788..2077612 | - | 825 | WP_000754740.1 | SDR family oxidoreductase | - |
| S_RS11630 () | 2077695..2077949 | - | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| S_RS26125 () | 2077971..2078667 | - | 697 | Protein_2099 | IS1 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|