MGE detailed information
MGE type: Prophage MGE length: 22834 bp
Accession: NC_004556 Location: 446192..469025 Organism: Xylella fastidiosa Temecula1 Replicon: chromosome
Accession: NC_004556 Location: 446192..469025 Organism: Xylella fastidiosa Temecula1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PD_RS01855 () | 441564..443354 | + | 1791 | WP_004089284.1 | succinate dehydrogenase flavoprotein subunit | - |
| PD_RS01860 () | 443375..444160 | + | 786 | WP_004089282.1 | succinate dehydrogenase iron-sulfur subunit | - |
| PD_RS01865 () | 444281..444529 | + | 249 | WP_004089280.1 | succinate dehydrogenase assembly factor 2 | - |
| PD_RS01870 () | 444552..444932 | + | 381 | WP_011097604.1 | hypothetical protein | - |
| PD_RS01875 () | 444958..446199 | + | 1242 | WP_004089276.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| PD_RS01880 () | 446192..446914 | + | 723 | WP_004089270.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| PD_RS01885 () | 447262..449739 | + | 2478 | WP_038231910.1 | DNA internalization-related competence protein ComEC/Rec2 | - |
| PD_RS01890 () | 449724..450386 | + | 663 | WP_004085189.1 | MotA/TolQ/ExbB proton channel family protein | - |
| PD_RS01895 () | 450391..450828 | + | 438 | WP_004089267.1 | biopolymer transporter ExbD | - |
| PD_RS01900 () | 450846..452594 | + | 1749 | WP_004089264.1 | Lipid A export ATP-binding/permease protein MsbA | VF |
| PD_RS01905 () | 452591..453610 | + | 1020 | WP_004089261.1 | Tetraacyldisaccharide 4'-kinase | VF |
| PD_RS01910 () | 454017..454736 | - | 720 | Protein_349 | phage tail protein | - |
| PD_RS01915 () | 454636..455607 | - | 972 | WP_011097609.1 | hypothetical protein | - |
| PD_RS01920 () | 455615..456172 | - | 558 | WP_011097610.1 | phage tail protein I | - |
| PD_RS01925 () | 456165..457058 | - | 894 | WP_011097611.1 | baseplate J/gp47 family protein | - |
| PD_RS01930 () | 457058..457396 | - | 339 | WP_004090694.1 | GPW/gp25 family protein | - |
| PD_RS01935 () | 457594..457875 | + | 282 | WP_004090695.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PD_RS01940 () | 457886..458161 | + | 276 | WP_004085172.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| PD_RS01945 () | 458249..458551 | + | 303 | WP_004090696.1 | type II toxin-antitoxin system MqsR family toxin | Toxin Detail |
| PD_RS01950 () | 458554..458955 | + | 402 | WP_004090697.1 | type II toxin-antitoxin system MqsA family antitoxin | Antitoxin Detail |
| PD_RS01955 () | 459024..459611 | - | 588 | WP_011097612.1 | phage baseplate assembly protein V | - |
| PD_RS01960 () | 459608..460150 | - | 543 | WP_011097613.1 | hypothetical protein | - |
| PD_RS01965 () | 460126..460647 | - | 522 | WP_011097614.1 | hypothetical protein | - |
| PD_RS01970 () | 460644..460967 | - | 324 | WP_011097935.1 | hypothetical protein | - |
| PD_RS01975 () | 460967..461227 | - | 261 | WP_011097616.1 | hypothetical protein | - |
| PD_RS01980 () | 461245..463119 | - | 1875 | WP_011097617.1 | phage major capsid protein | - |
| PD_RS01985 () | 463116..463748 | - | 633 | WP_011097618.1 | phage portal protein | - |
| PD_RS01990 () | 463703..464263 | + | 561 | WP_080502611.1 | hypothetical protein | - |
| PD_RS01995 () | 464260..464538 | + | 279 | WP_011097620.1 | VRR-NUC domain-containing protein | - |
| PD_RS02000 () | 464540..464848 | - | 309 | WP_011097621.1 | hypothetical protein | - |
| PD_RS02005 () | 464933..466351 | + | 1419 | WP_011097622.1 | DEAD/DEAH box helicase | - |
| PD_RS02010 () | 466348..466602 | + | 255 | WP_011097623.1 | DUF4224 domain-containing protein | - |
| PD_RS02015 () | 466592..467611 | + | 1020 | WP_011097624.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| PD_RS02020 () | 468384..469025 | + | 642 | WP_011097625.1 | hypothetical protein | VF |
| PD_RS02025 () | 469053..469529 | + | 477 | WP_004089961.1 | histidine phosphatase family protein | - |
| PD_RS02030 () | 469534..470106 | + | 573 | WP_011097627.1 | YceI family protein | - |
| PD_RS02035 () | 470103..472061 | + | 1959 | WP_011097628.1 | phospholipase D family protein | - |
| PD_RS02040 () | 472994..473383 | - | 390 | WP_004089975.1 | helix-turn-helix domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|