MGE detailed information
MGE type: Prophage MGE length: 46722 bp
Accession: NC_004556 Location: 1284820..1331541 Organism: Xylella fastidiosa Temecula1 Replicon: chromosome
Accession: NC_004556 Location: 1284820..1331541 Organism: Xylella fastidiosa Temecula1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PD_RS05675 () | 1280148..1280933 | + | 786 | WP_004087362.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| PD_RS05680 () | 1280970..1283576 | - | 2607 | WP_004087363.1 | DNA mismatch repair protein MutS | - |
| PD_RS05685 () | 1284009..1284740 | - | 732 | WP_012382616.1 | monofunctional biosynthetic peptidoglycan transglycosylase | - |
| PD_RS05690 () | 1284820..1285680 | + | 861 | WP_004087365.1 | Hsp33 family molecular chaperone HslO | - |
| PD_RS05695 () | 1285885..1286703 | + | 819 | WP_172632656.1 | hypothetical protein | - |
| PD_RS05705 () | 1287476..1287820 | - | 345 | WP_004084923.1 | RidA family protein | - |
| PD_RS05710 () | 1288023..1288355 | - | 333 | WP_004088648.1 | DNA-binding transcriptional regulator | - |
| PD_RS05715 () | 1288547..1289629 | - | 1083 | WP_011097927.1 | phage late control D family protein | - |
| PD_RS05720 () | 1289620..1289838 | - | 219 | WP_004088371.1 | tail protein X | - |
| PD_RS05725 () | 1289835..1290317 | - | 483 | WP_011097928.1 | phage tail protein | - |
| PD_RS05730 () | 1290314..1292533 | - | 2220 | WP_011097929.1 | phage tail tape measure protein | - |
| PD_RS05735 () | 1292660..1292947 | - | 288 | WP_011097930.1 | phage tail assembly protein | - |
| PD_RS05740 () | 1292950..1293459 | - | 510 | WP_004086986.1 | phage major tail tube protein | - |
| PD_RS05745 () | 1293459..1294637 | - | 1179 | WP_011097931.1 | phage tail sheath family protein | - |
| PD_RS05750 () | 1294702..1296294 | - | 1593 | WP_011097932.1 | tail fiber domain-containing protein | - |
| PD_RS05755 () | 1296302..1296859 | - | 558 | WP_011097610.1 | phage tail protein I | - |
| PD_RS05760 () | 1296852..1297745 | - | 894 | WP_011097611.1 | baseplate J/gp47 family protein | - |
| PD_RS05765 () | 1297745..1298083 | - | 339 | WP_004090694.1 | GPW/gp25 family protein | - |
| PD_RS05770 () | 1298233..1298496 | + | 264 | WP_004090907.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| PD_RS05775 () | 1298483..1298764 | + | 282 | WP_004090909.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| PD_RS05780 () | 1298801..1299388 | - | 588 | WP_011097612.1 | phage baseplate assembly protein V | - |
| PD_RS05785 () | 1299385..1299927 | - | 543 | WP_011097613.1 | hypothetical protein | - |
| PD_RS05790 () | 1299903..1300424 | - | 522 | WP_011097614.1 | hypothetical protein | - |
| PD_RS05795 () | 1300421..1300744 | - | 324 | WP_011097935.1 | hypothetical protein | - |
| PD_RS05800 () | 1300744..1301004 | - | 261 | WP_011097616.1 | hypothetical protein | - |
| PD_RS05805 () | 1301022..1302896 | - | 1875 | WP_011097936.1 | phage major capsid protein | - |
| PD_RS05810 () | 1302952..1304478 | - | 1527 | WP_011097937.1 | phage portal protein | - |
| PD_RS05815 () | 1304475..1305026 | - | 552 | WP_004088901.1 | hypothetical protein | - |
| PD_RS05820 () | 1305030..1306982 | - | 1953 | WP_004088899.1 | phage terminase large subunit family protein | - |
| PD_RS05825 () | 1306975..1307550 | - | 576 | WP_011097938.1 | terminase small subunit | - |
| PD_RS05830 () | 1307681..1307905 | - | 225 | WP_012382622.1 | hypothetical protein | - |
| PD_RS05835 () | 1307907..1308368 | - | 462 | WP_011097939.1 | hypothetical protein | - |
| PD_RS05840 () | 1308358..1308687 | - | 330 | WP_004086884.1 | phage holin family protein | - |
| PD_RS05845 () | 1308680..1309174 | - | 495 | WP_011097941.1 | lysozyme | - |
| PD_RS05850 () | 1309141..1309758 | - | 618 | WP_011097942.1 | hypothetical protein | - |
| PD_RS05855 () | 1310177..1312708 | - | 2532 | WP_012382624.1 | primase | - |
| PD_RS05860 () | 1312844..1313410 | - | 567 | WP_011097944.1 | Bro-N domain-containing protein | - |
| PD_RS05865 () | 1313407..1313793 | - | 387 | WP_011097945.1 | phage antirepressor | - |
| PD_RS11850 () | 1313790..1314176 | - | 387 | WP_011097946.1 | hypothetical protein | - |
| PD_RS11855 () | 1314173..1314457 | - | 285 | Protein_1135 | hypothetical protein | - |
| PD_RS05870 () | 1314672..1314942 | - | 271 | Protein_1136 | hypothetical protein | - |
| PD_RS11860 () | 1314939..1315196 | - | 258 | WP_080729500.1 | hypothetical protein | - |
| PD_RS11865 () | 1315427..1315672 | - | 246 | WP_012382627.1 | hypothetical protein | - |
| PD_RS05880 () | 1315733..1315981 | - | 249 | WP_011097950.1 | hypothetical protein | - |
| PD_RS05885 () | 1315978..1316166 | - | 189 | WP_012382629.1 | hypothetical protein | - |
| PD_RS05890 () | 1316220..1316786 | - | 567 | WP_012382630.1 | hypothetical protein | - |
| PD_RS05895 () | 1316776..1317036 | - | 261 | WP_012382631.1 | helix-turn-helix domain-containing protein | - |
| PD_RS05900 () | 1317122..1317880 | + | 759 | WP_011097952.1 | helix-turn-helix transcriptional regulator | - |
| PD_RS05905 () | 1318041..1318580 | + | 540 | WP_011097953.1 | hypothetical protein | - |
| PD_RS05910 () | 1318603..1318812 | + | 210 | WP_012382632.1 | hypothetical protein | - |
| PD_RS05915 () | 1318866..1319249 | + | 384 | WP_012382633.1 | hypothetical protein | - |
| PD_RS05920 () | 1319467..1319856 | + | 390 | WP_011097955.1 | hypothetical protein | - |
| PD_RS05925 () | 1319853..1320317 | + | 465 | WP_011097956.1 | DUF1566 domain-containing protein | - |
| PD_RS05930 () | 1320374..1320856 | - | 483 | WP_004088357.1 | hypothetical protein | - |
| PD_RS05940 () | 1321156..1321347 | + | 192 | WP_012382634.1 | hypothetical protein | - |
| PD_RS05945 () | 1321371..1321562 | + | 192 | WP_012382635.1 | hypothetical protein | - |
| PD_RS05950 () | 1321594..1321791 | + | 198 | WP_004090711.1 | hypothetical protein | - |
| PD_RS05955 () | 1321778..1322275 | + | 498 | WP_012382636.1 | hypothetical protein | - |
| PD_RS05960 () | 1322272..1323549 | + | 1278 | WP_011097959.1 | DUF2800 domain-containing protein | - |
| PD_RS05965 () | 1323549..1324115 | + | 567 | WP_004090881.1 | DUF2815 family protein | - |
| PD_RS11295 () | 1324202..1325713 | + | 1512 | WP_011097960.1 | hypothetical protein | - |
| PD_RS05980 () | 1325715..1327895 | + | 2181 | WP_011097961.1 | DNA polymerase | - |
| PD_RS05985 () | 1327892..1328170 | + | 279 | WP_011097962.1 | VRR-NUC domain-containing protein | - |
| PD_RS05990 () | 1328172..1328618 | - | 447 | WP_012382639.1 | DUF1640 domain-containing protein | - |
| PD_RS05995 () | 1328703..1330121 | + | 1419 | WP_011097964.1 | DEAD/DEAH box helicase | - |
| PD_RS12715 () | 1330118..1330282 | + | 165 | WP_012382640.1 | hypothetical protein | - |
| PD_RS06000 () | 1330275..1330532 | + | 258 | WP_011097965.1 | DUF4224 domain-containing protein | - |
| PD_RS06005 () | 1330522..1331541 | + | 1020 | WP_011097966.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| PD_RS06010 () | 1331905..1334496 | + | 2592 | WP_004087286.1 | bifunctional lysylphosphatidylglycerol flippase/synthetase MprF | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|