MGE detailed information
MGE type: Prophage MGE length: 56765 bp
Accession: NC_004556 Location: 1161143..1217907 Organism: Xylella fastidiosa Temecula1 Replicon: chromosome
Accession: NC_004556 Location: 1161143..1217907 Organism: Xylella fastidiosa Temecula1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PD_RS04935 () | 1156756..1157010 | - | 255 | WP_004089715.1 | hypothetical protein | - |
| PD_RS04940 () | 1157184..1157516 | - | 333 | WP_004089713.1 | DNA-binding transcriptional regulator | - |
| PD_RS04945 () | 1158242..1159147 | - | 906 | WP_004089711.1 | hypothetical protein | - |
| PD_RS04955 () | 1159634..1160638 | - | 1005 | WP_011097867.1 | peptidase | - |
| PD_RS04960 () | 1161143..1162306 | - | 1164 | WP_011097868.1 | phage tail protein | - |
| PD_RS04965 () | 1162310..1162870 | - | 561 | WP_011097869.1 | DUF2612 domain-containing protein | - |
| PD_RS04970 () | 1162867..1164012 | - | 1146 | WP_011097870.1 | baseplate J/gp47 family protein | - |
| PD_RS04975 () | 1164162..1164470 | - | 309 | WP_004089386.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PD_RS04980 () | 1164479..1164718 | - | 240 | WP_011097871.1 | antitoxin | - |
| PD_RS04985 () | 1164856..1165209 | - | 354 | WP_011097872.1 | hypothetical protein | - |
| PD_RS04990 () | 1165206..1165847 | - | 642 | WP_004090764.1 | hypothetical protein | - |
| PD_RS04995 () | 1165844..1166674 | - | 831 | WP_004090766.1 | hypothetical protein | - |
| PD_RS05000 () | 1166671..1166988 | - | 318 | WP_011097873.1 | hypothetical protein | - |
| PD_RS05005 () | 1166988..1167758 | - | 771 | WP_004090769.1 | hypothetical protein | - |
| PD_RS05010 () | 1167816..1168142 | + | 327 | WP_004091353.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PD_RS05015 () | 1168139..1168420 | + | 282 | WP_004091355.1 | helix-turn-helix domain-containing protein | - |
| PD_RS05020 () | 1168479..1170368 | - | 1890 | WP_011097874.1 | hypothetical protein | - |
| PD_RS05025 () | 1170516..1170938 | - | 423 | WP_011097875.1 | hypothetical protein | - |
| PD_RS05030 () | 1170935..1171372 | - | 438 | WP_011097876.1 | DUF3277 family protein | - |
| PD_RS05035 () | 1171382..1172878 | - | 1497 | WP_011097877.1 | DUF3383 domain-containing protein | - |
| PD_RS05040 () | 1172879..1173412 | - | 534 | WP_172632642.1 | hypothetical protein | - |
| PD_RS05045 () | 1173336..1173716 | - | 381 | WP_011097879.1 | hypothetical protein | - |
| PD_RS05050 () | 1173697..1174170 | - | 474 | WP_011097880.1 | hypothetical protein | - |
| PD_RS05055 () | 1174167..1174538 | - | 372 | WP_011097881.1 | DUF4054 domain-containing protein | - |
| PD_RS05060 () | 1174538..1174891 | - | 354 | WP_011097882.1 | hypothetical protein | - |
| PD_RS05065 () | 1174955..1175938 | - | 984 | WP_004090291.1 | DUF2184 domain-containing protein | - |
| PD_RS05070 () | 1175948..1176430 | - | 483 | WP_004090290.1 | hypothetical protein | - |
| PD_RS05075 () | 1176440..1177648 | - | 1209 | WP_004090289.1 | DUF2213 domain-containing protein | - |
| PD_RS05080 () | 1177648..1178493 | - | 846 | WP_004090288.1 | phage head morphogenesis protein | - |
| PD_RS05085 () | 1178562..1178900 | + | 339 | WP_011097884.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PD_RS05090 () | 1178897..1179178 | + | 282 | WP_004090283.1 | helix-turn-helix domain-containing protein | - |
| PD_RS05095 () | 1179227..1180402 | - | 1176 | Protein_990 | DUF1073 domain-containing protein | - |
| PD_RS05100 () | 1180707..1181567 | - | 861 | WP_011097886.1 | DUF769 domain-containing protein | - |
| PD_RS05105 () | 1181580..1182764 | - | 1185 | WP_011097887.1 | hypothetical protein | - |
| PD_RS05110 () | 1182761..1183606 | - | 846 | WP_011097888.1 | DUF769 domain-containing protein | - |
| PD_RS11820 () | 1183619..1194062 | - | 10444 | Protein_994 | hemagglutinin repeat-containing protein | - |
| PD_RS12690 () | 1194196..1194342 | + | 147 | WP_155115100.1 | hypothetical protein | - |
| PD_RS05180 () | 1194458..1194700 | - | 243 | WP_011097889.1 | AlpA family phage regulatory protein | - |
| PD_RS05185 () | 1194756..1195988 | - | 1233 | WP_011097890.1 | Prophage integrase IntA ; Integrase | Integrase |
| PD_RS05190 () | 1196130..1196405 | - | 276 | WP_012382594.1 | hypothetical protein | - |
| PD_RS05195 () | 1196402..1197952 | - | 1551 | WP_004090279.1 | phage terminase large subunit | - |
| PD_RS05200 () | 1197942..1198301 | - | 360 | WP_004090276.1 | hypothetical protein | - |
| PD_RS05205 () | 1198393..1198629 | - | 237 | WP_038233055.1 | hypothetical protein | - |
| PD_RS05210 () | 1198607..1199068 | - | 462 | WP_011097892.1 | hypothetical protein | - |
| PD_RS05215 () | 1199058..1199387 | - | 330 | WP_011097893.1 | phage holin family protein | - |
| PD_RS05220 () | 1199380..1199877 | - | 498 | WP_004089579.1 | lysozyme | - |
| PD_RS05225 () | 1200081..1200419 | - | 339 | WP_004089578.1 | BrnA antitoxin family protein | - |
| PD_RS05230 () | 1200406..1200672 | - | 267 | WP_004089577.1 | BrnT family toxin | - |
| PD_RS05235 () | 1200861..1201559 | - | 699 | WP_011097895.1 | hypothetical protein | - |
| PD_RS05240 () | 1201688..1202149 | - | 462 | WP_011098060.1 | hypothetical protein | - |
| PD_RS05245 () | 1202146..1202910 | - | 765 | WP_004090689.1 | hypothetical protein | - |
| PD_RS05250 () | 1202816..1203703 | - | 888 | WP_012382597.1 | YdaU family protein | - |
| PD_RS05255 () | 1203700..1204488 | - | 789 | WP_011097897.1 | Bro-N domain-containing protein | - |
| PD_RS05260 () | 1204485..1205117 | - | 633 | WP_004088094.1 | Bro-N domain-containing protein | - |
| PD_RS11825 () | 1205114..1205398 | - | 285 | WP_004088096.1 | hypothetical protein | - |
| PD_RS05265 () | 1205395..1205643 | - | 249 | WP_011097898.1 | hypothetical protein | - |
| PD_RS05270 () | 1205640..1205828 | - | 189 | WP_004088102.1 | hypothetical protein | - |
| PD_RS12695 () | 1205856..1206047 | - | 192 | WP_004088104.1 | hypothetical protein | - |
| PD_RS05280 () | 1206306..1206551 | - | 246 | WP_004088108.1 | hypothetical protein | - |
| PD_RS05285 () | 1206636..1207310 | + | 675 | WP_012382600.1 | helix-turn-helix transcriptional regulator | - |
| PD_RS05290 () | 1207361..1207972 | - | 612 | WP_004088112.1 | Fic/DOC family protein | Toxin Detail |
| PD_RS05295 () | 1207969..1208157 | - | 189 | WP_004088114.1 | antitoxin VbhA family protein | Antitoxin Detail |
| PD_RS05305 () | 1208549..1209085 | + | 537 | WP_012382601.1 | hypothetical protein | - |
| PD_RS05310 () | 1209082..1209495 | + | 414 | WP_004088056.1 | DUF1566 domain-containing protein | - |
| PD_RS05315 () | 1209492..1209893 | + | 402 | WP_004088054.1 | hypothetical protein | - |
| PD_RS12700 () | 1209890..1210039 | + | 150 | WP_012382602.1 | hypothetical protein | - |
| PD_RS11830 () | 1210125..1210403 | + | 279 | WP_004088050.1 | hypothetical protein | - |
| PD_RS05320 () | 1210426..1210617 | + | 192 | WP_012382603.1 | hypothetical protein | - |
| PD_RS05325 () | 1210638..1210982 | + | 345 | WP_004088346.1 | hypothetical protein | - |
| PD_RS05330 () | 1211022..1211843 | + | 822 | WP_004088345.1 | DUF2303 family protein | - |
| PD_RS05335 () | 1211859..1212785 | + | 927 | WP_004088344.1 | phage recombination protein Bet | - |
| PD_RS05340 () | 1212782..1214434 | + | 1653 | WP_004088343.1 | YqaJ viral recombinase family protein | - |
| PD_RS05345 () | 1214463..1215227 | + | 765 | WP_011097903.1 | UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase | - |
| PD_RS11835 () | 1215224..1215443 | + | 220 | Protein_1032 | phage antirepressor protein | - |
| PD_RS05350 () | 1215488..1216108 | + | 621 | WP_004088341.1 | Bro-N domain-containing protein | - |
| PD_RS05355 () | 1216175..1216621 | + | 447 | WP_004088340.1 | single-stranded DNA-binding protein | - |
| PD_RS05360 () | 1216640..1216888 | + | 249 | WP_011097904.1 | DUF4224 domain-containing protein | - |
| PD_RS05365 () | 1216888..1217907 | + | 1020 | WP_011097905.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| PD_RS05370 () | 1218048..1219097 | + | 1050 | WP_012382604.1 | two-component sensor histidine kinase | - |
| PD_RS05375 () | 1219090..1220517 | + | 1428 | WP_004572832.1 | nitrogen regulation protein NR(I) | - |
| PD_RS11840 () | 1220579..1221355 | - | 777 | Protein_1039 | Tn3 family transposase | - |
| PD_RS05385 () | 1221341..1222345 | + | 1005 | Protein_1040 | DNA topoisomerase III | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|