MGE detailed information
MGE type: Conjugative plasmid MGE length: 51158 bp
Accession: NC_002490 Location: 1..51158 Organism: Xylella fastidiosa 9a5c Replicon: plasmid pXF51
Accession: NC_002490 Location: 1..51158 Organism: Xylella fastidiosa 9a5c Replicon: plasmid pXF51
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XF_RS12140 () | 47..301 | + | 255 | WP_042464021.1 | helix-turn-helix domain-containing protein | - |
| XF_RS12145 () | 489..1010 | + | 522 | WP_209320018.1 | Type IV secretion system protein virB1 | VF |
| XF_RS12150 () | 1012..2994 | + | 1983 | WP_010895200.1 | type I DNA topoisomerase | - |
| XF_RS12155 () | 3065..3328 | + | 264 | WP_010895201.1 | hypothetical protein | - |
| XF_RS12160 () | 3353..3709 | + | 357 | WP_069106970.1 | TrbC/VirB2 family protein | - |
| XF_RS12165 () | 3712..4080 | + | 369 | WP_010895203.1 | hypothetical protein | VF |
| XF_RS12170 () | 4094..6541 | + | 2448 | WP_010895204.1 | Type IV secretion system protein virB4 | VF |
| XF_RS12175 () | 6538..7218 | + | 681 | WP_010895205.1 | Type IV secretion system protein virB5 | VF |
| XF_RS12185 () | 7542..7790 | + | 249 | WP_010895207.1 | hypothetical protein | - |
| XF_RS12190 () | 7794..8840 | + | 1047 | WP_010895208.1 | type IV secretion system protein | - |
| XF_RS12195 () | 9150..9971 | + | 822 | WP_010895209.1 | Type IV secretion system protein virB8 | VF |
| XF_RS12200 () | 9982..10818 | + | 837 | WP_010895210.1 | Type IV secretion system protein virB9 | VF |
| XF_RS12205 () | 10887..12161 | + | 1275 | WP_042464078.1 | Type IV secretion system protein virB10 | VF |
| XF_RS12210 () | 12158..13189 | + | 1032 | WP_042464027.1 | Type IV secretion system protein VirB11 | VF |
| XF_RS12215 () | 13155..15164 | + | 2010 | WP_042464030.1 | hypothetical protein | VF |
| XF_RS12220 () | 15175..17466 | + | 2292 | WP_010895214.1 | hypothetical protein | - |
| XF_RS12225 () | 17463..17660 | + | 198 | WP_042464033.1 | hypothetical protein | - |
| XF_RS12230 () | 17741..17983 | + | 243 | WP_042464081.1 | hypothetical protein | - |
| XF_RS12240 () | 18343..18900 | - | 558 | WP_042464084.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| XF_RS12245 () | 18959..19243 | - | 285 | WP_143707262.1 | hypothetical protein | - |
| XF_RS12250 () | 19412..19831 | - | 420 | WP_010895219.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| XF_RS12255 () | 19831..20070 | - | 240 | WP_004085761.1 | ribbon-helix-helix domain-containing protein | - |
| XF_RS12260 () | 20466..20738 | + | 273 | WP_010895220.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| XF_RS12265 () | 20735..21220 | + | 486 | WP_010895221.1 | GNAT family N-acetyltransferase | Toxin Detail |
| XF_RS12270 () | 21694..21966 | - | 273 | WP_010895222.1 | DUF4190 domain-containing protein | - |
| XF_RS12275 () | 22031..22357 | - | 327 | WP_010895223.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| XF_RS12280 () | 22344..22574 | - | 231 | WP_042464041.1 | hypothetical protein | - |
| XF_RS12285 () | 22854..23099 | - | 246 | Protein_27 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| XF_RS12290 () | 23143..23310 | - | 168 | WP_042464043.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| XF_RS12295 () | 23298..23551 | - | 254 | Protein_29 | CopG family ribbon-helix-helix protein | - |
| XF_RS12300 () | 23811..24830 | - | 1020 | WP_010895227.1 | hypothetical protein | - |
| XF_RS12305 () | 25191..25946 | - | 756 | WP_010895228.1 | alpha/beta hydrolase | - |
| XF_RS12310 () | 26074..26238 | - | 165 | Protein_32 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| XF_RS12315 () | 26349..26735 | + | 387 | WP_042464090.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| XF_RS12320 () | 26716..27053 | + | 338 | Protein_34 | XRE family transcriptional regulator | - |
| XF_RS12325 () | 27208..27807 | - | 600 | WP_010895232.1 | hypothetical protein | VF |
| XF_RS12330 () | 27813..29189 | - | 1377 | WP_042463301.1 | P-type conjugative transfer protein TrbL | - |
| XF_RS12335 () | 29211..29447 | - | 237 | WP_010894503.1 | EexN family lipoprotein | - |
| XF_RS12340 () | 29464..30237 | - | 774 | WP_042464049.1 | P-type conjugative transfer protein TrbJ | - |
| XF_RS12345 () | 30256..31659 | - | 1404 | WP_042464052.1 | TrbI/VirB10 family protein | - |
| XF_RS12350 () | 31665..32141 | - | 477 | WP_010895235.1 | conjugal transfer protein TrbH | - |
| XF_RS12355 () | 32144..33034 | - | 891 | WP_010895236.1 | P-type conjugative transfer protein TrbG | - |
| XF_RS12360 () | 33051..33767 | - | 717 | WP_010895237.1 | conjugal transfer protein TrbF | - |
| XF_RS12365 () | 33764..36133 | - | 2370 | Protein_43 | conjugal transfer protein TrbE | - |
| XF_RS12370 () | 36275..36595 | + | 321 | WP_004091397.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| XF_RS12375 () | 36725..37051 | + | 327 | WP_010895238.1 | DNA-binding protein | - |
| XF_RS12610 () | 37587..38963 | - | 1377 | WP_052262879.1 | hypothetical protein | Relaxase |
| XF_RS12390 () | 38963..39496 | - | 534 | WP_042464059.1 | hypothetical protein | Relaxase |
| XF_RS12615 () | 39739..40128 | + | 390 | WP_010895241.1 | hypothetical protein | - |
| XF_RS12400 () | 40125..40832 | + | 708 | WP_010895242.1 | hypothetical protein | - |
| XF_RS12405 () | 40842..41315 | + | 474 | WP_010895243.1 | hypothetical protein | - |
| XF_RS12410 () | 41319..41771 | + | 453 | WP_042464096.1 | virulence factor | - |
| XF_RS14750 () | 41751..41954 | - | 204 | WP_173406025.1 | hypothetical protein | - |
| XF_RS14290 () | 42006..42374 | - | 369 | WP_042464065.1 | hypothetical protein | - |
| XF_RS12425 () | 42611..43195 | - | 585 | WP_010895246.1 | hypothetical protein | - |
| XF_RS12430 () | 43283..44119 | - | 837 | WP_042464068.1 | DUF4942 domain-containing protein | - |
| XF_RS12435 () | 44935..45165 | - | 231 | WP_157291842.1 | transcriptional regulator | - |
| XF_RS12440 () | 45192..45641 | - | 450 | WP_042464071.1 | hypothetical protein | - |
| XF_RS12445 () | 45706..46911 | - | 1206 | WP_010895251.1 | ParB/RepB/Spo0J family partition protein | - |
| XF_RS12450 () | 46908..47672 | - | 765 | WP_010895252.1 | ParA family protein | - |
| XF_RS12455 () | 47835..48245 | - | 411 | WP_010895253.1 | single-stranded DNA-binding protein | - |
| XF_RS12460 () | 48319..49110 | - | 792 | WP_042464099.1 | DUF3560 domain-containing protein | - |
| XF_RS12465 () | 50139..50837 | - | 699 | WP_155115012.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|