MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 65153 bp
Accession: NC_000915 Location: 1006987..1072139 Organism: Helicobacter pylori 26695 Replicon: chromosome
Accession: NC_000915 Location: 1006987..1072139 Organism: Helicobacter pylori 26695 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HP_RS04590 (HP0942) | 1002282..1003634 | - | 1353 | WP_000447623.1 | AGCS family amino acid carrier protein | - |
| HP_RS04595 (HP0943) | 1003675..1004907 | - | 1233 | WP_000712480.1 | FAD-binding oxidoreductase | - |
| HP_RS04600 (HP0944) | 1004929..1005306 | - | 378 | WP_000665817.1 | RidA family protein | - |
| HP_RS04610 (HP0944a) | 1005802..1006101 | + | 300 | WP_001862951.1 | TRL-like family protein | - |
| HP_RS04630 (HP0946) | 1006665..1008155 | + | 1491 | WP_000524398.1 | Na+/H+ antiporter NhaC family protein | - |
| HP_RS04635 (HP0947) | 1008470..1008832 | + | 363 | WP_000953818.1 | hypothetical protein | - |
| HP_RS04640 (HP0948) | 1009199..1010212 | - | 1014 | WP_001213490.1 | LapA family protein | - |
| HP_RS04645 (HP0949) | 1010222..1010674 | - | 453 | WP_001203892.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| HP_RS04650 (HP0950) | 1010688..1011557 | - | 870 | WP_000505053.1 | acetyl-CoA carboxylase, carboxyltransferase subunit beta | - |
| HP_RS04655 (HP0951) | 1011638..1012252 | + | 615 | WP_001862961.1 | recombination protein RecO | - |
| HP_RS04660 (HP0952) | 1012263..1012919 | + | 657 | WP_000669256.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| HP_RS04665 (HP0953) | 1012922..1013488 | - | 567 | WP_000476691.1 | hypothetical protein | - |
| HP_RS04670 (HP0954) | 1013553..1014185 | - | 633 | WP_000670110.1 | NAD(P)H-dependent oxidoreductase | - |
| HP_RS04675 (HP0955) | 1014182..1015036 | - | 855 | WP_000995079.1 | prolipoprotein diacylglyceryl transferase | - |
| HP_RS04680 (HP0956) | 1015046..1015774 | - | 729 | WP_000409617.1 | RNA pseudouridine synthase | - |
| HP_RS04685 (HP0957) | 1015786..1016967 | - | 1182 | WP_000472177.1 | 3-deoxy-D-manno-octulosonic acid transferase | VF |
| HP_RS04690 (HP0958) | 1016968..1017732 | - | 765 | WP_001091835.1 | zinc ribbon domain-containing protein | - |
| HP_RS04695 (HP0959) | 1017742..1018473 | - | 732 | WP_001229797.1 | GTP cyclohydrolase I | - |
| HP_RS04700 (HP0960) | 1018460..1019371 | - | 912 | WP_001150920.1 | glycine--tRNA ligase subunit alpha | - |
| HP_RS04705 (HP0961) | 1019385..1020323 | - | 939 | WP_000401714.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| HP_RS04710 | 1020455..1020667 | - | 213 | WP_029671444.1 | Acyl carrier protein | VF |
| HP_RS04715 (HP0963) | 1020909..1022252 | - | 1344 | WP_001862974.1 | dynamin-like GTPase family protein | - |
| HP_RS04720 | 1022249..1024581 | - | 2333 | Protein_920 | dynamin-like GTPase family protein | - |
| HP_RS04725 (HP0966) | 1024578..1026224 | - | 1647 | WP_000244300.1 | dynamin family protein | - |
| HP_RS04730 (HP0967) | 1026448..1026735 | - | 288 | WP_000271456.1 | endoribonuclease VapD | - |
| HP_RS04735 | 1026805..1027086 | - | 282 | Protein_923 | DUF3240 family protein | - |
| HP_RS04740 (HP0969) | 1027102..1030161 | - | 3060 | WP_015056073.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| HP_RS04745 (HP0970) | 1030161..1031240 | - | 1080 | WP_000816822.1 | sodium:proton antiporter | - |
| HP_RS04750 (HP0971) | 1031237..1032538 | - | 1302 | WP_001212364.1 | TolC family protein | - |
| HP_RS04755 (HP0972) | 1032528..1034633 | - | 2106 | WP_000555186.1 | glycine--tRNA ligase subunit beta | - |
| HP_RS04760 (HP0973) | 1034745..1035806 | + | 1062 | WP_000682021.1 | hypothetical protein | - |
| HP_RS04765 (HP0974) | 1035819..1037294 | + | 1476 | WP_000057737.1 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | - |
| HP_RS04770 (HP0975) | 1037309..1037590 | + | 282 | WP_001165207.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC | - |
| HP_RS04775 (HP0976) | 1037710..1039020 | - | 1311 | WP_001010809.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| HP_RS04780 (HP0977) | 1039149..1040612 | + | 1464 | WP_000574070.1 | peptidylprolyl isomerase | - |
| HP_RS04785 (HP0978) | 1040613..1042106 | + | 1494 | WP_161595581.1 | cell division protein FtsA | - |
| HP_RS04790 (HP0979) | 1042237..1043394 | + | 1158 | WP_000233600.1 | cell division protein FtsZ | - |
| HP_RS04795 (HP0980) | 1044552..1044854 | + | 303 | WP_001863015.1 | hypothetical protein | VF |
| HP_RS04800 (HP_0981) | 1044865..1045137 | + | 273 | WP_049794234.1 | exonuclease VII large subunit | - |
| HP_RS04805 (HP0982) | 1045596..1046204 | + | 609 | WP_001101624.1 | hypothetical protein | - |
| HP_RS04810 | 1046205..1046495 | + | 291 | WP_001169565.1 | hypothetical protein | - |
| HP_RS04815 | 1046764..1046893 | + | 130 | Protein_939 | DNA adenine methylase | - |
| HP_RS04820 (HP0983) | 1047054..1047878 | + | 825 | WP_000343415.1 | mechanosensitive ion channel family protein | - |
| HP_RS04825 | 1048165..1048380 | + | 216 | WP_000517562.1 | hypothetical protein | - |
| HP_RS04830 | 1048531..1048674 | - | 144 | WP_000923190.1 | hypothetical protein | - |
| HP_RS04835 (HP0986) | 1048714..1049427 | - | 714 | WP_010875575.1 | DUF1887 family protein | - |
| HP_RS04840 | 1049510..1049722 | - | 213 | WP_164930552.1 | hypothetical protein | - |
| HP_RS07950 | 1050812..1050961 | + | 150 | Protein_945 | relaxase | - |
| HP_RS04850 (HP0988) | 1051052..1051498 | - | 447 | WP_162481329.1 | IS200-IS605 family transposase IS605 | Transposase |
| HP_RS04855 (HP0989) | 1051550..1052833 | + | 1284 | WP_000930564.1 | IS200-IS605 family transposase IS605 | Transposase |
| HP_RS04860 (HP_0990) | 1052882..1053595 | + | 714 | WP_080012132.1 | hypothetical protein | - |
| HP_RS04865 (HP_0991) | 1053600..1054229 | - | 630 | WP_010875576.1 | hypothetical protein | - |
| HP_RS04870 (HP_0992) | 1054261..1054615 | - | 355 | Protein_950 | hypothetical protein | - |
| HP_RS04875 (HP0993) | 1054815..1055066 | + | 252 | WP_000006537.1 | hypothetical protein | - |
| HP_RS04880 (HP0994) | 1055038..1055841 | + | 804 | WP_000009111.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| HP_RS04885 (HP0995) | 1056158..1057225 | - | 1068 | WP_001120382.1 | Tyrosine recombinase XerH ; Integrase | Integrase |
| HP_RS04890 (HP0996) | 1058373..1060199 | - | 1827 | WP_000905829.1 | relaxase/mobilization nuclease domain-containing protein | - |
| HP_RS04895 (HP0997) | 1060324..1061607 | - | 1284 | WP_000930565.1 | IS200-IS605 family transposase IS605 | Transposase |
| HP_RS04900 (HP0998) | 1061659..1062105 | + | 447 | WP_162481329.1 | IS200-IS605 family transposase IS605 | Transposase |
| HP_RS04905 (HP_0999) | 1062194..1062421 | + | 228 | Protein_957 | DNA methyltransferase | - |
| HP_RS04910 (HP1000) | 1062687..1063343 | + | 657 | WP_000587397.1 | ParA family protein | - |
| HP_RS04915 (HP1001) | 1063428..1063712 | + | 285 | WP_000394638.1 | hypothetical protein ; Integrase | Integrase |
| HP_RS04920 (HP1002) | 1063756..1064940 | + | 1185 | WP_000665511.1 | hypothetical protein | - |
| HP_RS04925 (HP1003) | 1064965..1066874 | - | 1910 | Protein_961 | relaxase/mobilization nuclease domain-containing protein | - |
| HP_RS04930 (HP1005) | 1067156..1067470 | + | 315 | WP_000065304.1 | hypothetical protein | - |
| HP_RS04935 | 1067463..1067745 | + | 283 | Protein_963 | YafQ family addiction module toxin | - |
| HP_RS04940 (HP1006) | 1068021..1068545 | - | 525 | WP_025444691.1 | hypothetical protein | VF |
| HP_RS04945 (HP1007) | 1068602..1069929 | - | 1328 | Protein_965 | IS200-IS605 family transposase IS606 | Transposase |
| HP_RS04950 (HP1008) | 1069967..1070383 | + | 417 | WP_001862466.1 | IS200-IS605 family transposase IS606 | Transposase |
| HP_RS04955 (HP1009) | 1070508..1071303 | - | 796 | Protein_967 | Tyrosine recombinase XerH ; Integrase | Integrase |
| - | 1071944..1071994 | - | 51 | - | - | Toxin Detail |
| - | 1071960..1072031 | + | 72 | - | - | Antitoxin Detail |
| HP_RS04965 (HP1010) | 1072429..1074456 | + | 2028 | WP_001078673.1 | RNA degradosome polyphosphate kinase | - |
| HP_RS04970 (HP1011) | 1074493..1075548 | + | 1056 | WP_000967190.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| HP_RS04975 (HP1012) | 1075545..1076879 | + | 1335 | WP_000680224.1 | insulinase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|