| Effector Protein ID: 16119801 |
 T4SS name [ID] | VirB [19] |
| Gene symbol | virD5 |
| Locus tag | Atu6185 |
| Strain | Agrobacterium tumefaciens str. C58 |
| Replicon | plasmid Ti [GenBank: NC_003065] [Browse all T4SS(s) in this replicon] |
| Location [Strand] | 202074..204596 [+] |
| Product | virA/G regulated protein |
| Effector type | Protein |
| Descripton | VirD5 |
| T4CP requirement | T4CP Depedent |
| Target/Effection | VirD5 interacts with and stabilizes VirF in plants. |
| UniProt ID | A9CL19 |
| KEGG ID | atu:Atu6185 |
| PDB ID | NA |
| Domain hit(s) vs Pfam | Agro_virD5 [PF04730], Evalue: 0, Aligned region: 63..218 Agro_virD5 [PF04730], Evalue: 0, Aligned region: 203..341 Agro_virD5 [PF04730], Evalue: 0, Aligned region: 333..840 |
| Protein Sequence: 840 a.a. [Download] |
| >gi|16119801|ref|NP_396506.1| virA/G regulated protein [Agrobacterium tumefaciens str. C58] MRPSGNPNVDLSGSTASLAEVPAGATPVLNLIEPRNRPADDSLEGQTDRGEHPSASFDYDGMKLGAAERE AYENWCPSNRPTWKDLVLRARLDAIDSSAWLPDLGEESPLIFRYEGIPLGEGERQAYKEWQEEAQPTWED LVVNARMAVPDPCADVADEHNPLKEGEEFRSEASKRKRKKPIDQDENSPTSFYYDGMRLGEPEREAYDNW GNAEPPTWKDLVLKARLDAIDSSAWLFASEGSSSTFEYEGIPLGEGERQAYKEWQEDAQPTWEDLVINAR MAELDHPSWITDEHNSLEENLEFRPDARQASLKDSTDQRKSSSASFIYDGMKLGEPEHAAYENWSKPERP SWEALILDARQASIASSSVSNSLLAKTSSPVFLYEGMSLGDAERQSYGRWRQPAQPRWQNLVVNARLADL DPLAWIPDEHDPFAEAEALSPTSQSSGANKSNRALGQSDSGRPAFAYLAAQEASHLQSPACSQLETRRAL NFGSPGPDANPTESIAKCNRLDGVSKIKRLGTKGRRAVNATIHGGKFGAQGLLSEDCGQAAEPSPSEQTT RPRTDNIGTYASRKNERARLATETGKYESEHIFGFKVVHDTLRATKEGRRLERPMPAYLEYKELHRQHVG TGRGRTGLVGRGWPDDASYRADQRATLSDPVASAEGATASNGYQLNQLGYAHQLATHGLQSETPDGVTMP IQVATISYNYTVSRDPVLSPPSKEQAPPLLHLGPRGQTEAVLARETALTGKWPTLERECQVYQRFLALYD VKKDLDAKQLGVRQKKQALVAALNRTAGLIGASPLEAQSSTAEVEYTTDEPDERRVYDPRDRGRDKAFNR |
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| Nucleotide Sequence: 2523 bp [Download] |
| >gi|159161952|ref|NC_003065.3|:202074-204596 Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence ATGAGACCTTCAGGAAACCCGAACGTCGATCTTAGCGGTTCGACTGCATCGCTTGCCGAAGTTCCCGCCG GAGCTACCCCTGTCCTTAATCTAATCGAGCCCAGGAACCGTCCGGCTGACGACTCGCTTGAGGGCCAAAC CGATCGCGGCGAGCATCCATCTGCATCATTTGACTATGATGGCATGAAGCTTGGCGCCGCGGAGCGTGAA GCATACGAGAACTGGTGTCCATCGAACCGGCCTACATGGAAAGATCTGGTACTCAGGGCGCGCCTTGATG CAATCGACAGTTCCGCTTGGCTCCCCGATTTGGGCGAGGAGTCGCCTTTGATCTTCAGATATGAAGGGAT TCCGCTGGGTGAGGGGGAACGGCAAGCCTACAAAGAATGGCAAGAGGAGGCTCAGCCCACATGGGAAGAC CTCGTTGTCAACGCACGAATGGCGGTACCTGATCCTTGTGCTGACGTTGCAGACGAGCACAATCCCCTCA AAGAAGGCGAGGAGTTTCGGTCTGAAGCGTCGAAACGCAAGCGGAAAAAACCGATCGACCAGGACGAGAA TTCTCCTACATCGTTTTACTATGACGGGATGAGGCTCGGAGAACCCGAGCGCGAGGCATATGATAACTGG GGCAACGCGGAGCCGCCCACGTGGAAAGACCTGGTACTTAAGGCGCGCCTTGATGCAATTGACAGCTCCG CCTGGCTCTTTGCTTCAGAAGGGTCTTCCTCGACTTTTGAGTATGAGGGAATTCCACTGGGTGAGGGGGA ACGGCAAGCCTACAAAGAATGGCAAGAGGACGCTCAGCCCACGTGGGAGGACCTCGTCATTAATGCACGC ATGGCAGAACTCGACCATCCTTCTTGGATTACAGACGAGCACAATTCCCTTGAAGAAAACTTAGAGTTTC GGCCCGATGCAAGACAGGCCAGCCTGAAGGACTCGACCGACCAGCGGAAGAGTTCTTCCGCGTCATTTAT CTATGATGGAATGAAGCTCGGGGAACCCGAGCATGCTGCATACGAGAACTGGAGCAAACCGGAACGACCG TCATGGGAAGCCCTCATCCTAGATGCGCGCCAGGCTTCCATAGCAAGCTCTTCGGTTTCGAATTCGTTAC TTGCAAAGACATCCTCGCCAGTCTTTCTATACGAGGGAATGTCGCTAGGGGATGCGGAACGTCAATCGTA TGGAAGGTGGAGGCAGCCTGCCCAACCGCGATGGCAAAATCTTGTGGTGAACGCGCGCCTTGCGGATCTT GATCCGTTGGCCTGGATTCCCGATGAACATGATCCGTTTGCGGAAGCCGAGGCGCTTAGCCCCACTTCGC AATCGAGTGGCGCCAACAAGTCCAACCGCGCTTTGGGTCAATCAGATTCAGGCCGGCCCGCCTTCGCATA TCTGGCAGCACAAGAGGCGAGTCACCTGCAATCACCGGCATGCTCACAATTGGAAACGAGGCGTGCATTA AATTTCGGGTCGCCTGGACCGGATGCAAATCCAACGGAAAGCATCGCCAAATGTAATCGTTTGGATGGCG TCAGTAAAATTAAGCGATTAGGCACCAAAGGCCGCCGGGCAGTAAACGCGACTATTCACGGCGGCAAGTT CGGTGCGCAAGGACTGTTGTCCGAAGATTGCGGACAAGCGGCTGAGCCCTCTCCATCGGAACAAACTACT CGGCCGCGAACCGATAATATTGGTACCTATGCAAGCCGGAAAAACGAACGAGCTCGGCTGGCTACAGAGA CCGGGAAATACGAATCGGAGCACATTTTCGGATTTAAGGTCGTCCACGATACTTTGCGGGCGACCAAAGA AGGCCGTCGTCTCGAAAGGCCAATGCCGGCATACCTCGAATACAAGGAGCTTCATCGGCAACACGTAGGG ACAGGAAGAGGACGGACTGGACTGGTCGGGCGCGGATGGCCAGATGATGCGAGCTATCGCGCAGATCAAA GGGCAACCCTGTCGGACCCTGTTGCGTCCGCGGAAGGTGCAACAGCTTCAAATGGGTACCAGTTGAACCA GCTGGGCTACGCGCACCAGCTCGCCACCCATGGTCTCCAAAGTGAAACGCCCGATGGGGTTACCATGCCA ATTCAAGTTGCGACAATTAGCTACAACTATACAGTGAGTCGTGATCCGGTCCTTTCACCACCCAGCAAAG AACAAGCGCCCCCATTGCTACACCTTGGGCCTCGTGGGCAAACGGAAGCTGTGCTTGCCCGCGAGACCGC ATTGACCGGAAAATGGCCAACTCTCGAGCGTGAGTGTCAAGTGTATCAGCGGTTTTTGGCCCTGTACGAC GTAAAGAAGGATCTGGACGCCAAACAACTTGGTGTACGGCAGAAAAAGCAGGCACTCGTTGCGGCGTTGA ACCGGACCGCCGGCTTAATTGGCGCGTCACCTTTGGAAGCCCAATCGTCGACCGCTGAGGTTGAATATAC TACCGACGAGCCCGATGAACGACGGGTTTATGATCCGCGCGATCGAGGCAGAGACAAAGCGTTCAATCGC TGA |
| Reference |
(1) Aguilar J; Zupan J; Cameron TA; Zambryski PC (2010). Agrobacterium type IV secretion system and its substrates form helical arrays around the circumference of virulence-induced cells. Proc Natl Acad Sci U S A. 107(8):3758-63. [PudMed:20133577] 
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| experimental literature |