SecReT4
T4SS ID806
StrainYersinia enterocolitica plasmid pYE854 (NC_010377)
Repliconplasmid pYE854 [Browse all T4SS(s) in this replicon]
AccessionNC_010377
Location15280..24200; 54838..74069
NameTra_F
Functionconjugation
ClassificationType IVA; Type F
experimental Experimental investigation has been performed on this T4SS.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number011101111
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number110101100
ComponentTraY_FTrbC_FOrf169_F
Number011

The information of T4SS components from NC_010377
Region 1: 15280..24200
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1pYE854_p01910488..10667 [+], 180169544185hypothetical protein 
2pYE854_p02010829..11230 [+], 402169544186putative anaerobic dehydrogenase 
3pYE854_p02111266..12075 [+], 810169544187putative arconitate hydratase 
4pYE854_p02212795..13067 [+], 273169544188hypothetical protein 
5pYE854_p02313055..13357 [+], 303169544189hypothetical protein 
6pYE854_p02413371..13751 [+], 381169544190hypothetical protein 
7pYE854_p02513810..14106 [-], 297169544191hypothetical protein 
8pYE854_p02614390..14755 [+], 366169544192hypothetical protein 
9pYE854_p02714867..15199 [-], 333169544193hypothetical protein 
10pYE854_p02814949..15278 [+], 330169544194hypothetical protein 
11pYE854_p029 (traD)15280..17352 [+], 2073169544195hypothetical protein  TraD_F
12pYE854_p03015630..15956 [-], 327169544196hypothetical protein 
13pYE854_p03116272..16490 [-], 219169544197hypothetical protein 
14pYE854_p031a16712..16930 [+], 219169544198hypothetical protein 
15pYE854_p03216902..17327 [-], 426169544199hypothetical protein 
16pYE854_p03316948..17106 [-], 159169544200hypothetical protein 
17pYE854_p034 (traI)17353..22323 [+], 4971169544201mobilization protein TraI  TraI_F
18pYE854_p034a18239..18469 [+], 231169544202hypothetical protein 
19pYE854_p03518525..18725 [-], 201169544203hypothetical protein 
20pYE854_p03621474..21782 [-], 309169544204hypothetical protein 
21pYE854_p03722368..22895 [-], 528169544205hypothetical protein 
22pYE854_p03822896..23201 [-], 306169544206hypothetical protein 
23pYE854_p03923164..23568 [-], 405169544207hypothetical protein 
24pYE854_p040 (pilT)23568..24200 [-], 633169544208putative transglycosylase PilT  Orf169_F
25pYE854_p04124320..24748 [+], 429169544209hypothetical protein 
26pYE854_p04224758..25174 [+], 417169544210histone-like nucleoid-structuring protein H-NS 
27pYE854_p04325251..25505 [-], 255169544211hypothetical protein 
28pYE854_p04425504..25683 [+], 180169544212hypothetical protein 
29pYE854_p04525510..26280 [-], 771169544213hypothetical protein 
30pYE854_p04625640..25891 [+], 252169544214hypothetical protein 
31pYE854_p04726076..26285 [-], 210169544215hypothetical protein 
32pYE854_p04826463..26657 [-], 195169544216hypothetical protein 
33pYE854_p04926723..26875 [-], 153169544217hypothetical protein 
34pYE854_p05026982..27170 [-], 189169544218hypothetical protein 
35pYE854_p05127067..27837 [-], 771169544219hypothetical protein 
36pYE854_p05227576..27785 [-], 210169544220hypothetical protein 
37pYE854_p05327800..28090 [-], 291169544221hypothetical protein 
38pYE854_p05528384..28776 [+], 393169544223hypothetical protein 
 
Region 2: 54838..74069
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1pYE854_p11450121..50852 [+], 732169544287hypothetical protein 
2pYE854_p11550697..50897 [-], 201169544288hypothetical protein 
3pYE854_p11650845..51051 [+], 207169544289hypothetical protein 
4pYE854_p11751098..51577 [+], 480169544290hemolysin-coregulated protein 
5pYE854_p11851537..51743 [-], 207169544291hypothetical protein 
6pYE854_p11951850..52896 [+], 1047169544292hypothetical protein 
7pYE854_p12052687..52866 [-], 180169544293hypothetical protein 
8pYE854_p12153194..53445 [+], 252169544294XRE family transcriptional regulator 
9pYE854_p12253273..53458 [+], 186169544295hypothetical protein 
10pYE854_p12353560..53715 [-], 156169544296hypothetical protein 
11pYE854_p12453570..54076 [-], 507169544297hypothetical protein 
12pYE854_p12554080..54424 [-], 345169544298hypothetical protein 
13pYE854_p12654123..54293 [+], 171169544299hypothetical protein 
14pYE854_p12754487..54747 [-], 261169544300hypothetical protein 
15pYE854_p12854614..54802 [+], 189169544301hypothetical protein 
16pYE854_p12954838..58491 [-], 3654169544302exoprotein  TraG_F
17pYE854_p13055143..55325 [+], 183169544303hypothetical protein 
18pYE854_p13155866..56147 [-], 282169544304hypothetical protein 
19pYE854_p13255906..56124 [+], 219169544305hypothetical protein 
20pYE854_p13357170..57547 [+], 378169544306hypothetical protein 
21pYE854_p13458271..58483 [+], 213169544307hypothetical protein 
22pYE854_p135 (traH)58488..59876 [-], 1389169544308putative pilus assembly protein  TraH_F
23pYE854_p13658636..58788 [+], 153169544309hypothetical protein 
24pYE854_p13759886..60749 [-], 864169544310TraF precursor  TraF_F
25pYE854_p13860759..61178 [-], 420169544311putative lipoprotein 
26pYE854_p13961039..61278 [+], 240169544312hypothetical protein 
27pYE854_p140 (traF)61189..61653 [-], 465169544313type IV secretory pathway protease TraF 
28pYE854_p141 (trbC)61653..62372 [-], 720169544314sex pilus assembly and mating pair formation protein TrbC  TrbC_F
29pYE854_p141a61955..62119 [-], 165169544315hypothetical protein 
30pYE854_p142 (traU)62372..63955 [-], 1584169544316TraU family protein  TraU_F
31pYE854_p14362385..62564 [+], 180169544317hypothetical protein 
32pYE854_p143a62596..62757 [-], 162169544318hypothetical protein 
33pYE854_p14462948..63259 [+], 312169544319hypothetical protein 
34pYE854_p14563078..63398 [+], 321169544320hypothetical protein 
35pYE854_p145a63712..63900 [-], 189169544321hypothetical protein 
36pYE854_p14664110..64343 [-], 234169544322hypothetical protein 
37pYE854_p147 (traZ)64359..65969 [-], 1611169544323conjugative transfer protein 
38pYE854_p147a64433..64672 [-], 240169544324hypothetical protein 
39pYE854_p147b64901..65101 [-], 201169544325hypothetical protein 
40pYE854_p14864921..65190 [+], 270169544326hypothetical protein 
41pYE854_p148a65369..65569 [-], 201169544327hypothetical protein 
42pYE854_p149 (traN)65944..67995 [-], 2052169544328type IV conjugative transfer system protein TraN  TraN_F
43pYE854_p149a66021..66236 [-], 216169544329hypothetical protein 
44pYE854_p150 (traC)67997..70570 [-], 2574169544330type IV secretory pathway VirB4 component  TraC_F
45pYE854_p150a69403..69555 [-], 153169544331hypothetical protein 
46pYE854_p15169845..70156 [+], 312169544332hypothetical protein 
47pYE854_p15270570..71076 [-], 507169544333hypothetical protein  TraV_F
48pYE854_p153 (traB)71100..72350 [-], 1251169544334TraB pilus assembly family protein  TraB_F
49pYE854_p15471290..71628 [+], 339169544335hypothetical protein 
50pYE854_p15572025..72198 [+], 174169544336hypothetical protein 
51pYE854_p15672347..73135 [-], 789169544337hypothetical protein  TraK_F
52pYE854_p15772942..73142 [+], 201169544338hypothetical protein 
53pYE854_p15873137..73787 [-], 651169544339sex pilus assembly/synthesis protein 
54pYE854_p15973797..74069 [-], 273169544340hypothetical protein  TraL_F
55pYE854_p160 (traE)74086..74454 [-], 369169544341conjugative transfer protein TraE 
56pYE854_p16174508..75389 [-], 882169544342protein-disulfide isomerase 
57pYE854_p16274694..74954 [+], 261169544343hypothetical protein 
58pYE854_p16374707..74883 [+], 177169544344hypothetical protein 
59pYE854_p16475379..75696 [-], 318169544345hypothetical protein 
60pYE854_p16575908..76228 [-], 321169544346hypothetical protein 
61pYE854_p16675919..76110 [-], 192169544347hypothetical protein 
62pYE854_p16776339..76692 [-], 354169544348phage terminase GpA 
63pYE854_p16876769..76942 [+], 174169544349hypothetical protein 
64pYE854_p16976792..77067 [+], 276169544350hypothetical protein 
65pYE854_p17077057..77209 [-], 153169544351hypothetical protein 
66pYE854_p171 (rep)77277..78677 [+], 1401169544352replication protein 
67pYE854_p171a77410..77592 [+], 183169544353hypothetical protein 
68pYE854_p17278167..78322 [-], 156169544354hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Hammerl JA; Klein I; Lanka E; Appel B; Hertwig S (2008). Genetic and functional properties of the self-transmissible Yersinia enterocolitica plasmid pYE854, which mobilizes the virulence plasmid pYV. J Bacteriol. 190(3):991-1010. [PudMed:18055592]
 

Genomics & Bioinformatics Group in MML, SJTU