T4SS ID	728
Strain	Acidovorax sp. JS42
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_008782
Location	1327178..1354704
Name	Tfc
Function	conjugation
Classification	Type IVC; Type G
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	Tfc1	Tfc2	Tfc3	Tfc4	Tfc5	Tfc6	Tfc7	Tfc8	Tfc9
Number	0	1	1	1	1	1	0	1	1
Component	Tfc10	Tfc11	Tfc12	Tfc13	Tfc14	Tfc15	Tfc16	Tfc17	Tfc18
Number	0	1	1	1	1	1	1	0	0
Component	Tfc19	Tfc20	Tfc21	Tfc22	Tfc23	Tfc24
Number	1	0	0	1	1	1

The information of T4SS components from NC_008782
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Ajs_1243	1322310..1323404 [+], 1095	121593648	signal peptidase II
2	Ajs_1245	1323801..1325684 [-], 1884	121593649	relaxase
3	Ajs_1246	1325914..1326300 [+], 387	121593650	AbrB family transcriptional regulator
4	Ajs_1247	1326300..1326758 [+], 459	121593651	hypothetical protein
5	Ajs_1248	1326785..1327162 [+], 378	121593652	hypothetical protein
6	Ajs_1249	1327178..1328695 [-], 1518	121593653	hypothetical protein	Tfc19
7	Ajs_1250	1328710..1329069 [-], 360	121593654	hypothetical protein
8	Ajs_1251	1329066..1330460 [-], 1395	121593655	hypothetical protein	Tfc22
9	Ajs_1252	1330470..1331417 [-], 948	121593656	hypothetical protein	Tfc23
10	Ajs_1253	1331414..1331860 [-], 447	121593657	hypothetical protein	Tfc24
11	Ajs_1254	1332024..1332518 [-], 495	121593658	DNA repair protein RadC
12	Ajs_1255	1332698..1333462 [-], 765	121593659	hypothetical protein
13	Ajs_1256	1333487..1336378 [-], 2892	121593660	hypothetical protein	Tfc16
14	Ajs_1257	1336378..1336827 [-], 450	121593661	hypothetical protein	Tfc15
15	Ajs_1258	1336808..1338238 [-], 1431	121593662	hypothetical protein	Tfc14
16	Ajs_1259	1338228..1339136 [-], 909	121593663	hypothetical protein	Tfc13
17	Ajs_1260	1339133..1339825 [-], 693	121593664	hypothetical protein	Tfc12
18	Ajs_1261	1339822..1340220 [-], 399	121593665	hypothetical protein	Tfc11
19	Ajs_1262	1340232..1340591 [-], 360	121593666	hypothetical protein
20	Ajs_1263	1340608..1340841 [-], 234	121593667	hypothetical protein
21	Ajs_1264	1340838..1341221 [-], 384	121593668	hypothetical protein	Tfc9
22	Ajs_1265	1341425..1341895 [+], 471	121593669	DNA-binding domain-containing protein
23	Ajs_1266	1341892..1342467 [+], 576	121593670	hypothetical protein
24	Ajs_1267	1342485..1343399 [+], 915	121593671	ATPase central domain-containing protein
25	Ajs_1268	1343396..1343866 [+], 471	121593672	hypothetical protein
26	Ajs_1269	1343863..1344363 [+], 501	121593673	hypothetical protein
27	Ajs_1270	1344363..1345265 [+], 903	121593674	hypothetical protein
28	Ajs_1271	1345304..1346029 [+], 726	121593675	hypothetical protein
29	Ajs_1272	1346039..1348663 [+], 2625	121593676	hypothetical protein
30	Ajs_1273	1348704..1349453 [-], 750	121593677	hypothetical protein	Tfc8
31	Ajs_1274	1349450..1351642 [-], 2193	121593678	hypothetical protein	Tfc6
32	Ajs_1275	1351647..1352195 [-], 549	121593679	hypothetical protein	Tfc5
33	Ajs_1276	1352192..1352782 [-], 591	121593680	lytic transglycosylase catalytic subunit	Tfc4
34	Ajs_1277	1352764..1353489 [-], 726	121593681	hypothetical protein	Tfc3
35	Ajs_1278	1353506..1354141 [-], 636	121593682	hypothetical protein
36	Ajs_1279	1354138..1354704 [-], 567	121593683	hypothetical protein	Tfc2
37	Ajs_1280	1354831..1355193 [+], 363	121593684	ArsR family transcriptional regulator
38	Ajs_1281	1355196..1355690 [+], 495	121593685	protein tyrosine phosphatase
39	Ajs_1282	1355701..1356777 [+], 1077	121593686	arsenical-resistance protein
40	Ajs_1283	1356794..1357216 [+], 423	121593687	arsenate reductase
41	Ajs_1284	1357200..1357931 [+], 732	121593688	NADPH-dependent FMN reductase

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICEAciJS42-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673]

This literature contains bioinformatics investigation