T4SS ID	705
Strain	Cupriavidus metallidurans CH34
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_007973
Location	2545874..2573458
Name	Tfc
Function	conjugation
Classification	Type IVC; Type G
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	Tfc1	Tfc2	Tfc3	Tfc4	Tfc5	Tfc6	Tfc7	Tfc8	Tfc9
Number	0	1	1	1	1	1	0	1	1
Component	Tfc10	Tfc11	Tfc12	Tfc13	Tfc14	Tfc15	Tfc16	Tfc17	Tfc18
Number	0	1	1	1	1	1	1	0	0
Component	Tfc19	Tfc20	Tfc21	Tfc22	Tfc23	Tfc24
Number	1	0	0	1	1	1

The information of T4SS components from NC_007973
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Rmet_2327	2541444..2542553 [+], 1110	94311263	putative adenine-specific DNA methyltransferase
2	Rmet_2328	2542604..2542924 [+], 321	94311264	hypothetical protein
3	Rmet_2329	2543014..2543319 [+], 306	94311265	hypothetical protein
4	Rmet_2330	2543456..2545735 [+], 2280	94311266	putative plasmid-related DNA/RNA helicase
5	Rmet_2331 (pilL)	2545874..2546473 [+], 600	94311267	pilL lipoprotein (type IV pili)	Tfc2
6	Rmet_2332	2546470..2547114 [+], 645	94311268	hypothetical protein
7	Rmet_2333	2547127..2547864 [+], 738	94311269	hypothetical protein	Tfc3
8	Rmet_2334	2547846..2548436 [+], 591	94311270	putative lytic transglycosylase, catalytic	Tfc4
9	Rmet_2335	2548433..2548981 [+], 549	94311271	hypothetical protein	Tfc5
10	Rmet_2336 (virD4)	2548986..2551175 [+], 2190	94311272	VirD4, type IV secretory pathway, VirD4 components	Tfc6
11	Rmet_2337	2551172..2551921 [+], 750	94311273	hypothetical protein	Tfc8
12	Rmet_2338	2551962..2554586 [-], 2625	94311274	hypothetical protein
13	Rmet_2339	2554596..2555321 [-], 726	94311275	hypothetical protein
14	Rmet_2340	2555360..2556262 [-], 903	94311276	hypothetical protein
15	Rmet_2341	2556262..2556915 [-], 654	94311277	hypothetical protein
16	Rmet_6523	2556759..2557229 [-], 471	335055595	hypothetical protein
17	Rmet_2342	2557226..2558140 [-], 915	94311278	putative AAA ATPase, central region
18	Rmet_2343	2558158..2558733 [-], 576	94311279	hypothetical protein
19	Rmet_2344	2558730..2559200 [-], 471	94311280	putative excisionase
20	Rmet_2345	2559404..2559787 [+], 384	94311281	hypothetical protein	Tfc9
21	Rmet_2346	2559784..2560017 [+], 234	94311282	hypothetical protein
22	Rmet_2347	2560034..2560393 [+], 360	94311283	hypothetical protein
23	Rmet_2348	2560406..2560804 [+], 399	94311284	hypothetical protein	Tfc11
24	Rmet_2349	2560801..2561493 [+], 693	94311285	hypothetical protein	Tfc12
25	Rmet_2350	2561490..2562401 [+], 912	94311286	hypothetical protein	Tfc13
26	Rmet_2351	2562391..2563809 [+], 1419	94311287	hypothetical protein	Tfc14
27	Rmet_2352	2563790..2564230 [+], 441	94311288	putative secreted protein	Tfc15
28	Rmet_2353	2564230..2567121 [+], 2892	94311289	type IV secretory pathway, VirB4 components	Tfc16
29	Rmet_2354	2567146..2567910 [+], 765	94311290	hypothetical protein
30	Rmet_2355 (radC)	2568086..2568580 [+], 495	94311291	DNA binding protein
31	Rmet_2356	2568745..2569191 [+], 447	94311292	hypothetical protein	Tfc24
32	Rmet_2357	2569188..2570138 [+], 951	94311293	hypothetical protein	Tfc23
33	Rmet_2358	2570148..2571542 [+], 1395	94311294	hypothetical protein	Tfc22
34	Rmet_2359	2571539..2571895 [+], 357	94311295	hypothetical protein
35	Rmet_2360	2571911..2573458 [+], 1548	94311296	hypothetical protein	Tfc19
36	Rmet_2361	2573474..2573833 [-], 360	94311297	hypothetical protein
37	Rmet_2362	2573907..2574539 [-], 633	94311298	hypothetical protein
38	Rmet_2363	2574552..2575178 [-], 627	94311299	hypothetical protein
39	Rmet_2364	2575344..2577386 [+], 2043	94311300	relaxase
40	Rmet_2365	2577434..2578429 [-], 996	94311301	putative transcriptional regulator

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICECmeCH34-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673]

This literature contains bioinformatics investigation