T4SS ID	627
Strain	Staphylococcus aureus subsp. aureus ED98
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_013450
Location	1967115..1974624
Name	Ydd
Function	conjugation
Classification	Type IVD; Type GP
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	YdcQ	YddB	YddC	YddD	YddE	YddG	YddH
Number	1	1	1	1	1	1	0

The information of T4SS components from NC_013450
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	SAAV_1925	1962412..1962927 [-], 516	269203512	ThiJ/PfpI family protein
2	SAAV_1926	1963058..1963219 [-], 162	269203513	hypothetical protein
3	SAAV_1927	1963443..1964594 [+], 1152	269203514	hypothetical protein
4	SAAV_1928	1964717..1965001 [+], 285	269203515	transposon-related protein
5	SAAV_1929	1965152..1965472 [+], 321	269203516	transposon-related protein
6	SAAV_1930	1965486..1965788 [+], 303	269203517	transposon-related protein
7	SAAV_1931	1965963..1967054 [+], 1092	269203518	replication initiation factor family protein
8	SAAV_1932	1967115..1968170 [+], 1056	269203519	transposon-related protein	YddB
9	SAAV_1933	1968175..1968435 [+], 261	269203520	transposon-related protein	YddC
10	SAAV_1934	1968447..1968830 [+], 384	269203521	transposon-related protein	YddD
11	SAAV_1935	1968865..1971360 [+], 2496	269203522	transposon-related protein	YddE
12	SAAV_1936	1971414..1972772 [+], 1359	269203523	ftsk/spoiiie family protein	YdcQ
13	SAAV_1937	1972777..1974624 [+], 1848	269203524	transposon-related protein	YddG
14	SAAV_1938	1974614..1975660 [+], 1047	269203525	Putative TraG protein
15	SAAV_1939	1975667..1976257 [+], 591	269203526	transposon-related protein
16	SAAV_1940	1976313..1976669 [+], 357	269203527	lipoprotein, putative
17	SAAV_1941	1976778..1977281 [+], 504	269203528	transposase
18	SAAV_1942	1977349..1977798 [+], 450	269203529	transposase
19	SAAV_1943	1978211..1978741 [-], 531	269203530	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICESauED98-1 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673]

This literature contains bioinformatics investigation