SecReT4

T4SS
References

T4SS ID	565
Strain	Orientia tsutsugamushi str. Ikeda
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_010793
Location	502015..511838
Name	Tra_F
Function	NA
Classification	Type IVA; Type F
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	TraA_F	TraB_F	TraC_F	TraD_F	TraE_F	TraF_F	TraG_F	TraH_F	TraI_F
Number	0	1	1	0	1	1	1	1	0
Component	TraK_F	TraL_F	TraM_F	TraN_F	TraQ_F	TraU_F	TraV_F	TraW_F	TraX_F
Number	0	0	0	1	0	1	1	0	0
Component	TraY_F	TrbC_F	Orf169_F
Number	0	1	0

The information of T4SS components from NC_010793

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	OTT_0475	498155..499177 [+], 1023	189183382	integrase
2	OTT_0476	499717..500019 [-], 303	189183383	hypothetical protein
3	OTT_0477	500003..501142 [+], 1140	189183384	reverse transcriptase
4	OTT_0478	501636..501785 [+], 150	189183385	hypothetical protein
5	OTT_0479	501785..501928 [+], 144	189183386	conjugative transfer protein TraE
6	OTT_0480	502015..502338 [+], 324	189183387	conjugative transfer protein TraE	TraE_F
7	OTT_0481	502335..502637 [+], 303	189183388	hypothetical protein
8	OTT_0482	502637..502741 [+], 105	189183389	hypothetical protein
9	OTT_0483	502841..503080 [+], 240	189183390	conjugative transfer protein TraB
10	OTT_0484	503043..503312 [+], 270	189183391	conjugative transfer protein TraB	TraB_F
11	OTT_0485	503312..503641 [+], 330	189183392	hypothetical protein	TraV_F
12	OTT_0486	503622..505409 [+], 1788	189183393	conjugative transfer protein TraC	TraC_F
13	OTT_0487	505323..506360 [-], 1038	189183394	ankyrin repeat-containing protein 05_03
14	OTT_0488	506728..507411 [+], 684	189183395	conjugative transfer protein TraU	TraU_F
15	OTT_0489	507496..507816 [+], 321	189183396	conjugative transfer protein TrbC	TrbC_F
16	OTT_0490	507813..508253 [+], 441	189183397	conjugative transfer protein TraN
17	OTT_0491	508304..509503 [+], 1200	189183398	conjugative transfer protein TraN	TraN_F
18	OTT_0492	509500..510126 [+], 627	189183399	conjugative transfer protein TraF	TraF_F
19	OTT_0493	510202..511503 [+], 1302	189183400	conjugative transfer protein TraH	TraH_F
20	OTT_0494	511503..511838 [+], 336	189183401	conjugative transfer protein TraG	TraG_F
21	OTT_0495	512009..512977 [+], 969	189183402	transposase
22	OTT_0496	512993..513583 [-], 591	189183403	integrase
23	OTT_0497	514551..515081 [+], 531	189183404	hypothetical protein
24	OTT_0498	515568..515780 [+], 213	189183405	transposase
25	OTT_0499	516167..516367 [+], 201	189183406	transposase

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Nakayama K; Yamashita A; Kurokawa K; Morimoto T; Ogawa M; Fukuhara M; Urakami H; Ohnishi M; Uchiyama I; Ogura Y; Ooka T; Oshima K; Tamura A; Hattori M; Hayashi T (2008). The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution. DNA Res. 15(4):185-99. [PudMed:18508905]