SecReT4
T4SS ID492
StrainRickettsia bellii RML369-C
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_007940
Location87297..89720; 1110609..1118308; 1193014..1193382; 1351723..1377199
NameVirB
FunctionNA
ClassificationType IVA; Type P
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number011205022
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_007940
Region 1: 87297..89720
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RBE_0077 (ampG3)83645..84904 [+], 126091204892AmpG protein 
2RBE_0078 (tatC)84980..85726 [+], 74791204893Sec-independent protein translocase protein TatC 
3RBE_0079 (serS)85713..86993 [+], 128191204894seryl-tRNA synthetase 
4RBE_0080 (virB4-2)87297..89720 [+], 242491204895VirB4  VirB4
5RBE_008189921..93397 [+], 347791204896hypothetical protein 
6RBE_0082 (terC)93401..94309 [+], 90991204897tellurium resistance protein TerC 
 
Region 2: 1110609..1118308
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RBE_10051105880..1106170 [+], 29191205820succinyl-CoA:3-ketoacid-coenzyme A transferase 
2RBE_10061106417..1106581 [+], 16591205821succinyl-CoA:3-ketoacid-coenzyme A transferase 
3RBE_1007 (scoB)1106582..1107220 [+], 63991205822succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B 
4RBE_10081107281..1107445 [-], 16591205823transposase 
5RBE_10091107412..1108236 [-], 82591205824transposase 
6RBE_1010 (nuoN2)1108736..1110034 [-], 129991205825monovalent cation/H+ antiporter subunit D 
7RBE_1011 (mnhC)1110182..1110517 [-], 33691205826monovalent cation/H+ antiporter subunit C 
8RBE_1012 (virB9-1)1110609..1111361 [-], 75391205827VirB9  VirB9
9RBE_1013 (virB8-1)1111363..1112067 [-], 70591205828virulence protein  VirB8
10RBE_1014 (virB8-2)1112665..1113384 [+], 72091205829virulence protein  VirB8
11RBE_1015 (virB9-2)1113371..1113856 [+], 48691205830VirB9  VirB9
12RBE_1016 (virB10)1113963..1115396 [+], 143491205831VirB10  VirB10
13RBE_1017 (virB11)1115393..1116397 [+], 100591205832type IV secretion system ATPase VirB11  VirB11
14RBE_1018 (virD4)1116530..1118308 [+], 177991205833type IV secretion system protein VirB8  VirD4
15RBE_1019 (gppA)1118369..1119778 [+], 141091205834guanosine pentaphosphate phosphohydrolase 
16RBE_1020 (vapB1)1119876..1120163 [+], 28891205835antitoxin of toxin-antitoxin (TA) system VapB 
17RBE_1021 (vapC1)1120154..1120558 [+], 40591205836toxin of toxin-antitoxin (TA) system VapC 
18RBE_1022 (nuoL3)1120560..1122107 [+], 154891205837monovalent cation/H+ antiporter subunit D 
 
Region 3: 1193014..1193382
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RBE_11001188665..1190209 [-], 154591205915thermostable carboxypeptidase 
2RBE_1101 (recN)1190217..1191869 [-], 165391205916DNA repair protein RecN 
3RBE_1102 (comL)1192005..1192766 [-], 76291205917DNA uptake lipoprotein 
4RBE_1103 (virB2)1193014..1193382 [-], 36991205918VirB2-like protein  VirB2
5RBE_1104 (coxC)1193548..1194381 [-], 83491205919cytochrome c oxidase subunit III 
6RBE_1105 (coq7)1194827..1195366 [-], 54091205920ubiquinone biosynthesis protein coq7 
7RBE_1106 (holA)1195387..1196379 [-], 99391205921DNA polymerase III subunit delta 
8RBE_11071196376..1196867 [-], 49291205922hypothetical protein 
9RBE_11081197278..1197634 [+], 35791205923hypothetical protein 
10RBE_11091197688..1198014 [-], 32791205924hypothetical protein 
 
Region 4: 1351723..1377199
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1RBE_12571348138..1348698 [+], 56191206072hypothetical protein 
2RBE_1258 (tgt)1349090..1350169 [+], 108091206073queuine tRNA-ribosyltransferase 
3RBE_12591350153..1350470 [+], 31891206074hypothetical protein 
4RBE_1260 (gcp)1350467..1351492 [+], 102691206075DNA-binding/iron metalloprotein/AP endonuclease 
5RBE_1261 (virB6-5)1351723..1355196 [-], 347491206076VirB6  VirB6
6RBE_1262 (virB6-4)1355366..1358026 [-], 266191206077VirB6  VirB6
7RBE_1263 (virB6-3)1358033..1360900 [-], 286891206078VirB6  VirB6
8RBE_1264 (virB6-2)1360907..1362928 [-], 202291206079VirB6  VirB6
9RBE_1265 (virB6-1)1362915..1366034 [-], 312091206080VirB6  VirB6
10RBE_1266 (virB4-1)1366228..1368645 [-], 241891206081type IV secretion system ATPase VirB4  VirB4
11RBE_12671369076..1370032 [+], 95791206082transposase 
12RBE_12681370092..1371159 [-], 106891206083hypothetical protein 
13RBE_12691371242..1372240 [-], 99991206084hypothetical protein 
14RBE_12701372650..1373399 [-], 75091206085hypothetical protein 
15RBE_12711373544..1374230 [-], 68791206086outer surface protein 
16RBE_1272 (fdxA)1374396..1374719 [-], 32491206087ferredoxin 
17RBE_1273 (ccmC)1374724..1375416 [-], 69391206088Heme exporter protein C 
18RBE_12741375854..1376810 [+], 95791206089transposase 
19RBE_1275 (virB3)1376912..1377199 [-], 28891206090type IV secretion system protein VirB3  VirB3
20RBE_1276 (argB)1377255..1378187 [-], 93391206091acetylglutamate kinase 
21RBE_1277 (engB)1378135..1378773 [-], 63991206092ribosome biogenesis GTP-binding protein YsxC 
22RBE_1278 (rpmE)1379421..1379660 [-], 2409120609350S ribosomal protein L31 
23RBE_1279 (rpmB)1379657..1379950 [-], 2949120609450S ribosomal protein L28 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Gillespie JJ; Ammerman NC; Dreher-Lesnick SM; Rahman MS; Worley MJ; Setubal JC; Sobral BS; Azad AF (2009). An anomalous type IV secretion system in Rickettsia is evolutionarily conserved. PLoS One. 4(3):e4833. [PudMed:19279686] in_silico
(2) Ogata H; La Scola B; Audic S; Renesto P; Blanc G; Robert C; Fournier PE; Claverie JM; Raoult D (2006). Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens. PLoS Genet. 2(5):e76. [PudMed:16703114]
 
in_silico This literature contains bioinformatics investigation

Genomics & Bioinformatics Group in MML, SJTU