SecReT4

T4SS
References

T4SS ID	490
Strain	Rickettsia akari str. Hartford
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_009881
Location	136910..154547; 259904..260263; 382294..390172; 1086555..1088987
Name	VirB
Function	NA
Classification	Type IVA; Type P
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	VirB1	VirB2	VirB3	VirB4	VirB5	VirB6	VirB7	VirB8	VirB9
Number	0	1	1	2	0	5	0	2	2
Component	VirB10	VirB11	VirD4
Number	1	1	1

The information of T4SS components from NC_009881
Region 1: 136910..154547

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	A1C_00735	132123..132902 [+], 780	157825268	ABC transporter permease
2	A1C_00740	133135..133890 [+], 756	157825269	ribonucleotide ABC transporter ATP-binding protein
3	A1C_00745	133892..134140 [+], 249	157825270	hypothetical protein
4	A1C_00750 (rpmB)	134219..134512 [+], 294	157825271	50S ribosomal protein L28
5	A1C_00755	134509..134745 [+], 237	157825272	50S ribosomal protein L31
6	A1C_00760 (engB)	135384..136022 [+], 639	157825273	ribosome biogenesis GTP-binding protein YsxC
7	A1C_00780	136910..137197 [+], 288	157825274	type IV secretion system protein VirB3	VirB3
8	A1C_00785	137496..139913 [+], 2418	157825275	type IV secretion system ATPase VirB4	VirB4
9	A1C_00790	140088..143114 [+], 3027	157825276	TrbL/VirB6 plasmid conjugative transfer protein	VirB6
10	A1C_00795	143101..145119 [+], 2019	157825277	TrbL/VirB6 plasmid conjugative transfer protein	VirB6
11	A1C_00800	145126..148056 [+], 2931	157825278	hypothetical protein	VirB6
12	A1C_00805	148265..150895 [+], 2631	157825279	TrbL/VirB6 plasmid conjugative transfer protein	VirB6
13	A1C_00810	151083..154547 [+], 3465	157825280	TrbL/VirB6 plasmid conjugative transfer protein	VirB6
14	A1C_00815	154665..154781 [+], 117	157825281	antitoxin of toxin-antitoxin system VapB
15	A1C_00820	154859..155110 [+], 252	157825282	toxin of toxin-antitoxin system
16	A1C_00825	155369..156418 [+], 1050	157825283	phosphate acetyltransferase
17	A1C_00830	156420..157577 [+], 1158	157825284	acetate kinase
18	A1C_00835 (trmD)	157903..158067 [+], 165	157825285	tRNA (guanine-N(1)-)-methyltransferase
19	A1C_00840 (trmD)	158144..158848 [+], 705	157825286	tRNA (guanine-N(1)-)-methyltransferase
20	A1C_00845 (rplS)	158864..159280 [+], 417	157825287	50S ribosomal protein L19

Region 2: 259904..260263

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	A1C_01345	255508..255852 [-], 345	157825375	hypothetical protein
2	A1C_01350	256028..256501 [+], 474	157825376	hypothetical protein
3	A1C_01355 (holA)	256509..257489 [+], 981	157825377	DNA polymerase III subunit delta
4	A1C_01360	257689..258228 [+], 540	157825378	ubiquinone biosynthesis protein Coq7
5	A1C_01365	258256..258414 [-], 159	157825379	hypothetical protein
6	A1C_01370	258912..259748 [+], 837	157825380	cytochrome c oxidase subunit III
7	A1C_01375	259904..260263 [+], 360	157825381	hypothetical protein	VirB2
8	A1C_01380	260562..261182 [-], 621	157825382	hypothetical protein
9	A1C_01385 (dapD)	261266..262090 [+], 825	157825383	2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
10	A1C_01390	262627..262734 [-], 108	157825384	hypothetical protein
11	A1C_01395	262758..263039 [-], 282	157825385	hypothetical protein
12	A1C_01400	263531..263791 [-], 261	157825386	hypothetical protein
13	A1C_01405	263824..263982 [-], 159	157825387	hypothetical protein

Region 3: 382294..390172

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	A1C_02010	378077..378271 [-], 195	157825501	toxin of toxin-antitoxin system VapC
2	A1C_02015	378813..380276 [-], 1464	157825502	putative monovalent cation/H+ antiporter subunit D
3	A1C_02020	380191..380295 [+], 105	157825503	putative monovalent cation/H+ antiporter subunit D
4	A1C_02025	380497..381597 [-], 1101	157825504	putative monovalent cation/H+ antiporter subunit D
5	A1C_02030	381653..381796 [+], 144	157825505	putative monovalent cation/H+ antiporter subunit C
6	A1C_02035	381780..382115 [-], 336	157825506	putative monovalent cation/H+ antiporter subunit C
7	A1C_02040	382294..383046 [-], 753	157825507	VirB9 protein	VirB9
8	A1C_02045	383048..383746 [-], 699	157825508	VirB8 protein	VirB8
9	A1C_02050	384210..384389 [+], 180	157825509	hypothetical protein
10	A1C_02055	384440..385171 [+], 732	157825510	VirB8 protein	VirB8
11	A1C_02060	385158..385634 [+], 477	157825511	VirB9 protein precursor	VirB9
12	A1C_02065	385779..387233 [+], 1455	157825512	virB10 protein	VirB10
13	A1C_02070	387230..388234 [+], 1005	157825513	type IV secretion system ATPase VirB11	VirB11
14	A1C_02075	388397..390172 [+], 1776	157825514	type IV secretion system protein VirB8	VirD4
15	A1C_02080	390182..391594 [+], 1413	157825515	guanosine pentaphosphate phosphohydrolase
16	A1C_02105	393376..393597 [+], 222	157825516	cell surface antigen-like protein Sca7
17	A1C_02110	393606..393824 [+], 219	157825517	cell surface antigen-like protein Sca7
18	A1C_02115	393836..394366 [+], 531	157825518	cell surface antigen-like protein Sca7
19	A1C_02120	394596..394814 [+], 219	157825519	cell surface antigen-like protein Sca7
20	A1C_02125	394811..394873 [+], 63	157825520	hypothetical protein

Region 4: 1086555..1088987

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	A1C_06065	1082953..1084218 [+], 1266	157826234	AmpG protein
2	A1C_06070	1084285..1085040 [+], 756	157826235	Sec-independent protein translocase protein TatC
3	A1C_06075	1085018..1086295 [+], 1278	157826236	seryl-tRNA synthetase
4	A1C_06080	1086555..1088987 [+], 2433	157826237	Type IV secretion/conjugal transfer ATPase, VirB4 family protein	VirB4
5	A1C_06085	1089243..1092779 [+], 3537	157826238	hypothetical protein
6	A1C_06090	1092784..1093689 [+], 906	157826239	tellurium resistance protein TerC

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Gillespie JJ; Ammerman NC; Dreher-Lesnick SM; Rahman MS; Worley MJ; Setubal JC; Sobral BS; Azad AF (2009). An anomalous type IV secretion system in Rickettsia is evolutionarily conserved. PLoS One. 4(3):e4833. [PudMed:19279686]

This literature contains bioinformatics investigation