 T4SS ID | 47 |
| Strain | Haemophilus influenzae 86-028NP |
| Replicon | chromosome [Browse all T4SS(s) in this replicon] |
| Accession | NC_007146 |
| Location | 107635..133856 |
| Name | Tfc |
| Function | Conjugation |
| Classification | Type IVC; Type G |
 Bioinformatics investigation has been performed on this T4SS. | |
T4SS components |
| Component | Tfc1 | Tfc2 | Tfc3 | Tfc4 | Tfc5 | Tfc6 | Tfc7 | Tfc8 | Tfc9 |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 |
| Component | Tfc10 | Tfc11 | Tfc12 | Tfc13 | Tfc14 | Tfc15 | Tfc16 | Tfc17 | Tfc18 |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component | Tfc19 | Tfc20 | Tfc21 | Tfc22 | Tfc23 | Tfc24 | |||
| Number | 1 | 1 | 1 | 1 | 1 | 1 |
The information of T4SS components from NC_007146 | ||||||
  | ||||||
| # | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Component | |
| 1 | NTHI0113 | 104691..105119 [+], 429 | 68248648 | hypothetical protein | ||
| 2 | NTHI0114 | 105131..105223 [+], 93 | 68248649 | hypothetical protein | ||
| 3 | NTHI0115 | 105234..105875 [+], 642 | 68248650 | hypothetical protein | ||
| 4 | NTHI0116 | 105910..106317 [+], 408 | 68248651 | hypothetical protein | ||
| 5 | NTHI0117 (radC2) | 106418..106888 [+], 471 | 68248652 | DNA repair radC-like protein | ||
| 6 | NTHI0118 | 106981..107577 [+], 597 | 68248653 | hypothetical protein | ||
| 7 | NTHI0119 | 107635..108399 [+], 765 | 68248654 | hypothetical protein | Tfc1 | |
| 8 | NTHI0120 (pilL) | 108498..109127 [+], 630 | 68248655 | lipoprotein | Tfc2 | |
| 9 | NTHI0121 | 109131..109871 [+], 741 | 68248656 | hypothetical protein | Tfc3 | |
| 10 | NTHI0122 | 109850..110608 [+], 759 | 68248657 | hypothetical protein | Tfc4 | |
| 11 | NTHI0123 | 110624..111130 [+], 507 | 68248658 | hypothetical protein | Tfc5 | |
| 12 | NTHI0125 | 111127..113376 [+], 2250 | 68248659 | hypothetical protein | Tfc6 | |
| 13 | NTHI0126 | 113695..114381 [+], 687 | 68248660 | hypothetical protein | Tfc8 | |
| 14 | NTHI0127 | 114512..114862 [+], 351 | 68248661 | hypothetical protein | Tfc9 | |
| 15 | NTHI0128 | 115131..115532 [+], 402 | 68248662 | hypothetical protein | Tfc10 | |
| 16 | NTHI0129 | 115552..115923 [+], 372 | 68248663 | hypothetical protein | Tfc11 | |
| 17 | NTHI0130 | 115935..116579 [+], 645 | 68248664 | hypothetical protein | Tfc12 | |
| 18 | NTHI0131 | 116579..117448 [+], 870 | 68248665 | hypothetical protein | Tfc13 | |
| 19 | NTHI0132 | 117459..118859 [+], 1401 | 68248666 | hypothetical protein | Tfc14 | |
| 20 | NTHI0133 | 118869..119276 [+], 408 | 68248667 | lipoprotein | Tfc15 | |
| 21 | NTHI0134 | 119292..122162 [+], 2871 | 68248668 | hypothetical protein | Tfc16 | |
| 22 | NTHI0135 | 122170..122577 [+], 408 | 68248669 | hypothetical protein | Tfc17 | |
| 23 | NTHI0136 | 122587..122910 [+], 324 | 68248670 | hypothetical protein | Tfc18 | |
| 24 | NTHI0137 | 122919..124412 [+], 1494 | 68248671 | hypothetical protein | Tfc19 | |
| 25 | NTHI0139 | 124468..124797 [-], 330 | 68248672 | hypothetical protein | Tfc20 | |
| 26 | NTHI0141 (tnpA) | 124955..127960 [-], 3006 | 68248673 | transposon Tn3 transposase | ||
| 27 | NTHI0140 | 126925..127041 [+], 117 | 68248674 | hypothetical protein | ||
| 28 | NTHI0142 (tnpR) | 128088..128681 [+], 594 | 162960936 | transposon Tn3 resolvase | ||
| 29 | NTHI2055 | 128729..129589 [+], 861 | 162960937 | beta-lactamase TEM | ||
| 30 | NTHI0143 | 129813..129992 [+], 180 | 68248676 | hypothetical protein | ||
| 31 | NTHI0144 | 130037..130444 [-], 408 | 68248677 | hypothetical protein | Tfc21 | |
| 32 | NTHI0145 | 130460..132460 [-], 2001 | 68248678 | hypothetical protein | Tfc22 | |
| 33 | NTHI0146 | 132475..133416 [-], 942 | 68248679 | hypothetical protein | Tfc23 | |
| 34 | NTHI0147 | 133413..133856 [-], 444 | 68248680 | hypothetical protein | Tfc24 | |
| 35 | NTHI0148 | 134168..134587 [+], 420 | 68248681 | hypothetical protein | ||
| 36 | NTHI0149 | 134672..134905 [+], 234 | 68248682 | hypothetical protein | ||
| 37 | NTHI0150 | 134908..135156 [+], 249 | 68248683 | hypothetical protein | ||
| 38 | NTHI0151 | 135160..135318 [+], 159 | 68248684 | hypothetical protein | ||
| 39 | NTHI0152 (traC) | 135449..136402 [+], 954 | 68248685 | antirestriction protein | ||
| 40 | NTHI0153 | 136506..137267 [+], 762 | 68248686 | type I restriction enzyme M subunit | ||
| 41 | NTHI0154 | 137493..138059 [+], 567 | 68248687 | hypothetical protein | ||
| 42 | NTHI0155 | 138099..138473 [+], 375 | 68248688 | hypothetical protein | ||
 Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any. |
Download FASTA format files |
| Proteins Genes |
|
(1) Bi D; Xu Z; Harrison EM; Tai C; Wei Y; He X; Jia S; Deng Z; Rajakumar K; Ou HY (2012). ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40(Database issue):D621-6. [PudMed:22009673]
|
|
(2) Juhas M; Power PM; Harding RM; Ferguson DJ; Dimopoulou ID; Elamin AR; Mohd-Zain Z; Hood DW; Adegbola R; Erwin A; Smith A; Munson RS; Harrison A; Mansfield L; Bentley S; Crook DW (2007). Sequence and functional analyses of Haemophilus spp. genomic islands. Genome Biol. 8(11):R237. [PudMed:17996041]
|
| This literature contains bioinformatics investigation |