T4SS ID	388
Strain	Xanthomonas campestris pv. campestris str. 8004
Replicon	chromosome [Browse all T4SS(s) in this replicon]
Accession	NC_007086
Location	1956087..1966861
Name	VirB
Function	effector translocation
Classification	Type IVA; Type P
Experimental investigation has been performed on this T4SS.

T4SS components

Component	VirB1	VirB2	VirB3	VirB4	VirB5	VirB6	VirB7	VirB8	VirB9
Number	1	1	1	1	0	0	0	1	1
Component	VirB10	VirB11	VirD4
Number	1	1	1

The information of T4SS components from NC_007086
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	XC_1626	1951975..1952343 [+], 369	66767950	type IV pilin
2	XC_1627	1952524..1953075 [-], 552	66767951	fimbrial biogenesis protein
3	XC_1628	1953215..1955236 [+], 2022	66767952	excinuclease ABC subunit B
4	XC_1629	1955811..1956053 [+], 243	66767953	hypothetical protein
5	XC_1630	1956087..1957760 [+], 1674	66767954	VirD4 protein	VirD4
6	XC_1631	1958257..1958499 [+], 243	66767955	hypothetical protein
7	XC_1632	1958610..1959653 [+], 1044	66767956	VirB8 protein	VirB8
8	XC_1633	1959650..1960417 [+], 768	66767957	VirB9 protein	VirB9
9	XC_1634	1960414..1961595 [+], 1182	66767958	VirB10 protein	VirB10
10	XC_1635	1961592..1962650 [+], 1059	66767959	VirB11 protein	VirB11
11	XC_1636	1962696..1963529 [+], 834	66767960	VirB1 protein	VirB1
12	XC_1637	1963592..1963996 [+], 405	66767961	VirB2 protein	VirB2
13	XC_1638	1963989..1964300 [+], 312	66767962	VirB3 protein	VirB3
14	XC_1639	1964408..1966861 [+], 2454	66767963	VirB4 protein	VirB4
15	XC_1640	1967008..1967151 [-], 144	66767964	hypothetical protein
16	XC_1641	1967589..1968956 [+], 1368	66767965	IS1478 transposase
17	XC_1642	1969222..1970838 [+], 1617	66767966	alpha-glucosidase

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

The Effector information is not available.

(1) He YQ; Zhang L; Jiang BL; Zhang ZC; Xu RQ; Tang DJ; Qin J; Jiang W; Zhang X; Liao J; Cao JR; Zhang SS; Wei ML; Liang XX; Lu GT; Feng JX; Chen B; Cheng J; Tang JL (2007). Comparative and functional genomics reveals genetic diversity and determinants of host specificity among reference strains and a large collection of Chinese isolates of the phytopathogen Xanthomonas campestris pv. campestris. Genome Biol. 8(10):R218. [PudMed:17927820]

(2) Qian W; Jia Y; Ren SX; He YQ; Feng JX; Lu LF; Sun Q; Ying G; Tang DJ; Tang H; Wu W; Hao P; Wang L; Jiang BL; Zeng S; Gu WY; Lu G; Rong L; Tian Y; Yao Z; Fu G; Chen B; Fang R; Qiang B; Chen Z; Zhao GP; Tang JL; He C (2005). Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris. Genome Res. 15(6):757-67. [PudMed:15899963]

This literature contains experimental investigation