T4SS ID	323
Strain	Polaromonas naphthalenivorans CJ2
Replicon	plasmid pPNAP01 [Browse all T4SS(s) in this replicon]
Accession	NC_008757
Location	69719..81445
Name	Trb
Function	conjugation
Classification	Type IVA; Type P
Bioinformatics investigation has been performed on this T4SS.

T4SS components

Component	TrbB	TrbC	TrbD	TrbE	TrbF	TrbG	TrbH	TrbI	TrbJ
Number	1	1	1	1	1	1	0	1	1
Component	TrbK	TrbL	TrbN	TraF	TraG
Number	0	1	0	0	1

The information of T4SS components from NC_008757
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Pnap_4188	65158..66897 [+], 1740	121582772	aldehyde dehydrogenase
2	Pnap_4189	66988..67698 [+], 711	121582773	OmpW family protein
3	Pnap_4191	68268..69179 [+], 912	121582774	LysR family transcriptional regulator
4	Pnap_4192	69191..69433 [+], 243	121582775	hypothetical protein
5	Pnap_4193	69719..71710 [+], 1992	121582776	conjugal transfer coupling protein TraG	TraG
6	Pnap_4194	71707..72159 [+], 453	121582777	CopG/DNA-binding domain-containing protein
7	Pnap_4195	72156..73187 [+], 1032	121582778	type II secretion system protein E	TrbB
8	Pnap_4196	73184..73543 [+], 360	121582779	conjugal transfer protein TrbC	TrbC
9	Pnap_4197	73540..73824 [+], 285	121582780	putative conjugal transfer TrbD transmembrane protein	TrbD
10	Pnap_4198	73846..76287 [+], 2442	121582781	conjugal transfer ATPase TrbE	TrbE
11	Pnap_4199	76284..77012 [+], 729	121582782	conjugal transfer protein TrbJ	TrbJ
12	Pnap_4200	77023..78396 [+], 1374	121582783	conjugal transfer protein TrbL	TrbL
13	Pnap_4201	78409..79113 [+], 705	121582784	conjugal transfer protein TrbF	TrbF
14	Pnap_4202	79110..80123 [+], 1014	121582785	conjugal transfer protein TrbG/VirB9/CagX	TrbG
15	Pnap_4203	80126..81445 [+], 1320	121582786	conjugation TrbI family protein	TrbI
16	Pnap_4204	81442..81711 [+], 270	121582787	hypothetical protein
17	Pnap_4205	82262..82612 [-], 351	121582788	hypothetical protein
18	Pnap_4206	82654..83067 [-], 414	121582789	hypothetical protein
19	Pnap_4207	83134..83589 [-], 456	121582790	hypothetical protein
20	Pnap_4208	83904..84173 [-], 270	121582791	hypothetical protein
21	Pnap_4209	85400..85678 [+], 279	121582792	hypothetical protein
22	Pnap_4210	85689..85958 [+], 270	121582793	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins        Genes

This T4SS is encoded by the integrative and conjugative element (ICE) ICE(Tn4371)6065 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)

(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653]

This literature contains bioinformatics investigation