| Protein ID: 350273355 |
 T4SS name [ID] | VirB [426] |
| Gene symbol | virD4 |
| Locus tag | RJP_0312 |
| Strain | Rickettsia japonica YH |
| Replicon | chromosome [GenBank: NC_016050] [Browse all T4SS(s) in this replicon] |
| Location [Strand] | 398836..400611 [+] |
| Product | virD4 protein |
| Component type | VirD4 |
| UniProt ID | G4KMM1 |
| KEGG ID | rja:RJP_0312 |
| PDB ID | NA |
| Domain hit(s) vs Pfam | T4SS-DNA_transf [PF02534], Evalue: 3.7e-166, Aligned region: 120..567 TraG-D_C [PF12696], Evalue: 3.1e-28, Aligned region: 404..526 TrwB_AAD_bind [PF10412], Evalue: 8.4e-22, Aligned region: 237..535 AAA_10 [PF12846], Evalue: 2.5e-05, Aligned region: 155..481 |
| Protein Sequence: 591 a.a. [Download] |
| >gi|350273355|ref|YP_004884668.1| virD4 protein [Rickettsia japonica YH] MEWHKILKVTRNIFGHAIIHPVVIFCTIWISGAFVAIFTNEVGALGVNINAINIAYKWAYWLINVWGQLK IADYNYLKLKLLASLLSPAIIVIIFYIKNFERIKSLQFFKQDEKVYGDASWANPSDIEAAGLRSKKGMLI GVDAGGYFVADGFQHALLFAPTGSGKGVGFVIPNLLFWSDSVVVHDIKLENHGLTSGWREKQGQKVFVWE PSNPDGITHCYNPIDWVSTKPGQMVDDVQKISNLIMPEKDFWNNEARSLFLGVTLYLIADPTKTKSFGEV VRTMRSDDVVYNLAVVLDTLGGVIHPVAYMNIAAFLQKADKERSGVISTMNSSLELWANPLIDSATASSD FNIQEFKKVKTTVYVGLTPDNIQRLQKLMQVFYQQATEFLSRKMPDLKEEPYGVMFLLDEFPTLGKMDTF KAGIAYFRGYRVRLFLIIQDTQQLKGTYEDAGMNSFLSNATYRITFAANNYETANLISQLVGNKTVEQRS FSKPLFFDLNISTRTQNVSQVQRALLLPQEVIQLPRDEQIVLIESFPPIKSRKIKYYEDKFFTSRLLPPT FVPTQVPFDPRANNNEASEETETITVPENNE |
| Nucleotide Sequence: 1776 bp [Download] |
| >gi|350273053|ref|NC_016050.1|:398836-400611 Rickettsia japonica YH, complete genome ATGGAATGGCATAAGATACTTAAAGTTACTAGAAATATATTCGGTCATGCTATAATTCATCCGGTTGTTA TTTTTTGTACCATTTGGATAAGTGGTGCATTTGTTGCAATTTTTACTAATGAGGTTGGAGCTTTAGGTGT AAATATAAATGCTATAAATATTGCTTATAAGTGGGCTTACTGGCTTATTAACGTTTGGGGGCAGTTAAAA ATTGCCGACTATAATTATTTAAAATTGAAGCTACTTGCCTCTCTTCTCAGTCCAGCTATTATTGTTATAA TATTTTACATTAAAAATTTTGAAAGAATAAAATCATTACAATTTTTCAAACAAGATGAAAAAGTATATGG AGATGCAAGCTGGGCTAATCCGTCAGATATAGAGGCTGCAGGTCTTAGATCTAAGAAAGGTATGCTGATC GGTGTTGATGCCGGTGGATATTTTGTTGCAGACGGGTTCCAGCATGCTTTATTATTTGCTCCTACCGGTT CAGGTAAAGGTGTAGGGTTTGTGATACCTAACTTGTTATTTTGGAGTGATTCGGTAGTAGTGCATGACAT AAAGCTCGAAAATCACGGGTTGACAAGTGGTTGGCGTGAGAAGCAAGGGCAGAAAGTTTTTGTATGGGAG CCTTCTAATCCTGATGGTATTACTCATTGTTATAATCCGATTGATTGGGTTAGTACTAAGCCTGGGCAAA TGGTTGATGACGTTCAAAAAATTTCAAATCTTATAATGCCGGAAAAGGATTTTTGGAATAATGAGGCACG AAGCTTATTTTTAGGCGTAACTCTATATTTAATAGCCGATCCTACTAAAACTAAATCTTTCGGTGAAGTA GTGCGTACTATGAGGAGTGACGACGTAGTTTATAATCTAGCGGTCGTACTCGATACGCTTGGTGGTGTAA TACATCCTGTTGCATATATGAATATTGCTGCATTTTTGCAAAAAGCCGATAAAGAGCGTTCCGGCGTAAT ATCTACAATGAACTCATCGCTTGAATTATGGGCAAATCCACTTATTGATTCAGCTACAGCATCTTCTGAT TTCAATATACAAGAATTTAAAAAAGTAAAAACAACCGTATATGTAGGGTTAACACCCGATAATATACAGC GTTTACAAAAATTAATGCAGGTGTTTTATCAGCAGGCGACAGAATTTTTAAGCCGCAAAATGCCGGATTT AAAGGAAGAGCCGTATGGAGTAATGTTCTTACTTGACGAGTTCCCGACGCTCGGGAAGATGGATACTTTT AAAGCCGGTATAGCTTATTTTAGAGGTTATAGAGTTCGTTTATTTTTAATTATTCAAGATACACAGCAGT TAAAAGGAACATATGAAGATGCAGGAATGAATTCTTTCTTATCTAATGCAACATATCGTATTACTTTTGC CGCTAATAACTATGAAACGGCAAATTTAATATCACAGCTTGTCGGTAATAAGACGGTAGAACAAAGATCA TTTAGTAAACCTTTATTTTTTGATCTTAATATTTCTACTAGAACTCAAAACGTTTCTCAGGTTCAAAGAG CTTTACTTTTACCTCAAGAAGTAATACAGTTACCGAGAGATGAGCAAATTGTTTTAATAGAATCCTTTCC GCCTATAAAATCTCGTAAAATTAAGTATTACGAAGATAAGTTTTTTACTAGTAGATTATTACCGCCGACT TTTGTACCTACTCAAGTACCTTTTGACCCTAGGGCAAATAATAATGAGGCTTCTGAAGAGACCGAAACAA TAACTGTTCCGGAAAATAATGAGTAA |