The information of T4SS components from NC_016050 |
| Region 1: 137397..151193 |
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| # | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Component | |
| 1 | RJP_0100 | 133320..133565 [-], 246 | 350273150 | hypothetical protein | | |
| 2 | RJP_0101 | 133682..134179 [-], 498 | 350273151 | hypothetical protein | | |
| 3 | RJP_0102 (rpmB) | 134970..135263 [+], 294 | 350273152 | 50S ribosomal protein L28 | | |
| 4 | RJP_0103 (rpmE) | 135260..135496 [+], 237 | 350273153 | 50S ribosomal protein L31 | | |
| 5 | RJP_0105 | 135875..136513 [+], 639 | 350273154 | GTP-binding protein | | |
| 6 | RJP_0106 (argB) | 136461..137384 [+], 924 | 350273155 | acetylglutamate kinase | | |
| 7 | RJP_0107 (virB3) | 137397..137684 [+], 288 | 350273156 | type IV secretory pathway, virB3-like protein | VirB3 | |
| 8 | RJP_0108 (virB4-1) | 137900..140317 [+], 2418 | 350273157 | type IV secretion/conjugal transfer ATPase, virB4 family | VirB4 | |
| 9 | RJP_0109 (virB6-1) | 140435..143437 [+], 3003 | 350273158 | trbL/virB6 plasmid Conjugative transfer protein | VirB6 | |
| 10 | RJP_0110 (virB6-2) | 143424..145439 [+], 2016 | 350273159 | trbL/virB6 plasmid Conjugative transfer protein | VirB6 | |
| 11 | RJP_0111 (virB6-3) | 145446..148346 [+], 2901 | 350273160 | trbL/virB6 plasmid Conjugative transfer protein | VirB6 | |
| 12 | RJP_0112 (virB6-4) | 148518..151193 [+], 2676 | 350273161 | trbL/virB6 plasmid Conjugative transfer protein | VirB6 | |
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| Region 2: 258104..258463 |
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| # | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Component | |
| 1 | RJP_0193 | 253621..253761 [+], 141 | 350273240 | hypothetical protein | | |
| 2 | RJP_0194 | 253902..254249 [-], 348 | 350273241 | hypothetical protein | | |
| 3 | RJP_0195 | 254419..254892 [+], 474 | 350273242 | hypothetical protein | | |
| 4 | RJP_0196 (holA) | 254900..255874 [+], 975 | 350273243 | DNA polymerase III subunit delta | | |
| 5 | RJP_0197 (coq7) | 256009..256548 [+], 540 | 350273244 | ubiquinone biosynthesis protein coq7 | | |
| 6 | RJP_0198 (coxC) | 257097..257948 [+], 852 | 350273245 | cytochrome c oxidase subunit III | | |
| 7 | RJP_0199 | 258104..258463 [+], 360 | 350273246 | virB2-like protein | VirB2 | |
| 8 | RJP_0200 | 258982..259530 [-], 549 | 350273247 | hypothetical protein | | |
| 9 | RJP_0201 (dapD) | 259582..260430 [+], 849 | 350273248 | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase | | |
| |
| Region 3: 392715..400611 |
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| # | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Component | |
| 1 | RJP_0301 | 388512..388916 [-], 405 | 350273344 | toxin of toxin-antitoxin VapC | | |
| 2 | RJP_0302 | 388907..389206 [-], 300 | 350273345 | antitoxin of toxin-antitoxin (TA) system vapB | | |
| 3 | RJP_0303 (nuoL2) | 389385..390848 [-], 1464 | 350273346 | NADH dehydrogenase I subunit L | | |
| 4 | RJP_0304 (nuoN2) | 391003..392304 [-], 1302 | 350273347 | NADH:ubiquinone oxidoreductase subunit 2 | | |
| 5 | RJP_0305 (mnhC) | 392301..392636 [-], 336 | 350273348 | hypothetical protein | | |
| 6 | RJP_0306 (virB9-1) | 392715..393467 [-], 753 | 350273349 | virB9 protein | VirB9 | |
| 7 | RJP_0307 (virB8-1) | 393469..394110 [-], 642 | 350273350 | virB8 protein | VirB8 | |
| 8 | RJP_0308 (virB8-2) | 394861..395592 [+], 732 | 350273351 | virB8 protein | VirB8 | |
| 9 | RJP_0309 (virB9-2) | 395579..396052 [+], 474 | 350273352 | virB9 protein | VirB9 | |
| 10 | RJP_0310 (virB10) | 396234..397682 [+], 1449 | 350273353 | virB10 protein | VirB10 | |
| 11 | RJP_0311 (virB11) | 397679..398683 [+], 1005 | 350273354 | virB11 protein | VirB11 | |
| 12 | RJP_0312 (virD4) | 398836..400611 [+], 1776 | 350273355 | virD4 protein | VirD4 | |
| 13 | RJP_0313 (gppA) | 400604..402025 [+], 1422 | 350273356 | guanosine pentaphosphate phosphohydrolase | | |
| 14 | RJP_0314 | 402171..402746 [-], 576 | 350273357 | hypothetical protein | | |
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| Region 4: 1134164..1136596 |
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| # | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Component | |
| 1 | RJP_0894 (ampG3) | 1130112..1131764 [+], 1653 | 350273913 | AmpG protein | | |
| 2 | RJP_0895 (tatC) | 1131831..1132586 [+], 756 | 350273914 | sec-independent protein translocase protein tatC | | |
| 3 | RJP_0896 (serS) | 1132564..1133841 [+], 1278 | 350273915 | seryl-tRNA synthetase | | |
| 4 | RJP_0897 (virB4-2) | 1134164..1136596 [+], 2433 | 350273916 | type IV secretion/conjugal transfer ATPase, virB4 family | VirB4 | |
| 5 | RJP_0898 | 1136731..1140219 [+], 3489 | 350273917 | hypothetical protein | | |
| 6 | RJP_0899 (terC) | 1140224..1141129 [+], 906 | 350273918 | tellurium resistance protein terC | | |
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T4SS ID
This T4SS is identified in this study.
Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.