Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | MHH54_RS11310 | Genome accession | NZ_CP152030 |
| Coordinates | 2257321..2257656 (+) | Length | 111 a.a. |
| NCBI ID | WP_012010555.1 | Uniprot ID | - |
| Organism | Bacillus sp. FSL K6-4563 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2252321..2262656
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MHH54_RS11290 (MHH54_11290) | gcvT | 2252798..2253895 (-) | 1098 | WP_342500259.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| MHH54_RS11295 (MHH54_11295) | - | 2254458..2256128 (+) | 1671 | WP_106035385.1 | SNF2-related protein | - |
| MHH54_RS11300 (MHH54_11300) | - | 2256143..2256940 (+) | 798 | WP_321999337.1 | YqhG family protein | - |
| MHH54_RS11305 (MHH54_11305) | - | 2257123..2257287 (+) | 165 | WP_003217357.1 | anti-repressor SinI family protein | - |
| MHH54_RS11310 (MHH54_11310) | sinR | 2257321..2257656 (+) | 336 | WP_012010555.1 | transcriptional regulator SinR | Regulator |
| MHH54_RS11315 (MHH54_11315) | - | 2257724..2258524 (-) | 801 | WP_003217403.1 | TasA family protein | - |
| MHH54_RS11320 (MHH54_11320) | - | 2258582..2259154 (-) | 573 | WP_003217306.1 | signal peptidase I | - |
| MHH54_RS11325 (MHH54_11325) | tapA | 2259206..2259733 (-) | 528 | WP_321999338.1 | amyloid fiber anchoring/assembly protein TapA | - |
| MHH54_RS11330 (MHH54_11330) | - | 2260033..2260311 (+) | 279 | WP_003217457.1 | DUF3889 domain-containing protein | - |
| MHH54_RS11335 (MHH54_11335) | - | 2260347..2260541 (-) | 195 | WP_034620826.1 | YqzE family protein | - |
| MHH54_RS11340 (MHH54_11340) | comGG | 2260601..2260984 (-) | 384 | WP_003217479.1 | competence type IV pilus minor pilin ComGG | - |
| MHH54_RS11345 (MHH54_11345) | comGF | 2260981..2261511 (-) | 531 | WP_226803663.1 | competence type IV pilus minor pilin ComGF | - |
| MHH54_RS11350 (MHH54_11350) | comGE | 2261420..2261737 (-) | 318 | WP_321999339.1 | competence type IV pilus minor pilin ComGE | - |
| MHH54_RS11355 (MHH54_11355) | comGD | 2261721..2262167 (-) | 447 | WP_003217424.1 | competence type IV pilus minor pilin ComGD | - |
| MHH54_RS11360 (MHH54_11360) | comGC | 2262160..2262453 (-) | 294 | WP_003217322.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 13001.59 Da Isoelectric Point: 5.2831
>NTDB_id=985795 MHH54_RS11310 WP_012010555.1 2257321..2257656(+) (sinR) [Bacillus sp. FSL K6-4563]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=985795 MHH54_RS11310 WP_012010555.1 2257321..2257656(+) (sinR) [Bacillus sp. FSL K6-4563]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |