Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NSQ95_RS11340 Genome accession   NZ_CP151993
Coordinates   2323521..2325965 (-) Length   814 a.a.
NCBI ID   WP_340883188.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL W7-1457     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2318521..2330965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ95_RS11320 (NSQ95_11320) - 2319478..2319771 (-) 294 WP_251555603.1 DUF1292 domain-containing protein -
  NSQ95_RS11325 (NSQ95_11325) ruvX 2319783..2320202 (-) 420 WP_169358024.1 Holliday junction resolvase RuvX -
  NSQ95_RS11330 (NSQ95_11330) - 2320205..2320471 (-) 267 WP_053588802.1 IreB family regulatory phosphoprotein -
  NSQ95_RS11335 (NSQ95_11335) alaS 2320548..2323181 (-) 2634 WP_340883189.1 alanine--tRNA ligase -
  NSQ95_RS11340 (NSQ95_11340) recD2 2323521..2325965 (-) 2445 WP_340883188.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NSQ95_RS11345 (NSQ95_11345) - 2325986..2326642 (-) 657 WP_340883187.1 tetratricopeptide repeat protein -
  NSQ95_RS11350 (NSQ95_11350) mnmA 2326657..2327772 (-) 1116 WP_298470374.1 tRNA 2-thiouridine(34) synthase MnmA -
  NSQ95_RS11355 (NSQ95_11355) - 2327791..2328924 (-) 1134 WP_340883186.1 cysteine desulfurase family protein -
  NSQ95_RS11360 (NSQ95_11360) - 2328942..2329364 (-) 423 WP_340885928.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 814 a.a.        Molecular weight: 91383.65 Da        Isoelectric Point: 5.1466

>NTDB_id=983979 NSQ95_RS11340 WP_340883188.1 2323521..2325965(-) (recD2) [Psychrobacillus sp. FSL W7-1457]
MTNEINNEKQFISGRPIVSIFHNPQNLFSIIKLKIKSTNTTYTDKEIIVTGYFPQLVLEEAYKFTGVIKNHPKYGIQFQV
ETFQKEVPATETGIVHYLSSDMFPGIGRKTAELIVKKLGENAINRILDDPASLDIIPKLGEDKKQTIRATLEQNLGLEKV
MIQLNEWGFGPQVAMKIYQAYREETIAKLTENPYRLIEDVEGVGFVRADELGYKLGIKGNHPDRIKAAIYHLLQTSSLSE
GHVFQYAEQLLEDVKRMLENAQREEISYESITQCCIELAEESRIVGEVNKFYIPSLYFSEVGISSKVETLLMDKDIHQFP
LKEIKKHLGPLEKRLGVKYANTQIKAIETALNSNITLLTGGPGTGKTTVVRGIVELYSELHGLSLDPKEWAKEQKPFPIV
LAAPTGRAAKRLSESTELPAMTIHRLLGFNGQEDTDTEGKEIEGRLVIIDETSMLDTWLGHQLLKAIPKDAQVIFVGDQD
QLPPVGPGQVLKDLLASKRIPTVELVDIYRQSEGSSIIELAHEMKQGSVPATLTAKTKDRSFIKATTEQIPKVVEQVLKA
ALSKGQSIREIQVLAPMYRGPAGIDALNKMIQEMVNPNTDGTRKEMTFGDTIYRIGDKVLQLVNQPESNVFNGDMGEVVA
IFRANETVEKKEMLVVSFDGNEVTYEKNDLNQITLAYCCSVHKSQGSEFQTVIMPVTRSYMKMLRRNLLYTGITRAKNFL
ILCGDPEVFKFGVERTDDLQRLTTLKERLSDEEKEEIETKSTSSVSAEKGRTEETLSVEADEVDSTYLSADNYHLIDPLI
GMKGITPYEFLDTD

Nucleotide


Download         Length: 2445 bp        

>NTDB_id=983979 NSQ95_RS11340 WP_340883188.1 2323521..2325965(-) (recD2) [Psychrobacillus sp. FSL W7-1457]
ATGACAAATGAAATAAATAACGAAAAACAATTTATATCAGGTCGACCAATCGTCTCTATCTTTCATAATCCGCAAAATCT
TTTCTCCATTATTAAACTAAAGATAAAATCCACTAATACTACATACACAGATAAAGAAATAATTGTTACAGGTTATTTCC
CCCAGTTAGTTTTAGAAGAAGCGTATAAATTTACAGGTGTTATAAAAAATCATCCAAAGTATGGTATACAGTTTCAAGTC
GAAACGTTCCAAAAGGAGGTCCCGGCAACAGAGACAGGGATTGTTCATTATCTATCTAGTGATATGTTTCCTGGGATAGG
TAGGAAGACCGCGGAGCTAATTGTTAAGAAACTAGGAGAAAATGCGATTAATCGAATTTTAGATGATCCAGCGTCTCTAG
ATATTATTCCAAAGCTAGGTGAAGATAAGAAACAAACTATTAGAGCCACATTAGAACAAAATTTAGGACTAGAAAAGGTT
ATGATTCAGCTAAATGAGTGGGGTTTTGGTCCCCAAGTTGCAATGAAAATCTATCAGGCCTATAGAGAAGAAACAATTGC
TAAGTTAACGGAAAACCCATATCGTTTAATAGAAGATGTTGAGGGGGTTGGTTTTGTACGTGCTGACGAGTTAGGTTACA
AGCTCGGGATAAAAGGAAACCATCCAGACCGTATAAAAGCAGCGATATACCATTTACTTCAAACTTCTTCGCTTAGTGAG
GGCCATGTCTTTCAATATGCTGAGCAGCTCTTAGAAGACGTTAAAAGAATGCTTGAAAATGCACAAAGAGAGGAAATCTC
TTATGAGTCAATAACACAATGTTGTATAGAGCTAGCTGAGGAAAGCAGGATTGTTGGAGAGGTAAATAAATTTTATATTC
CATCTCTCTATTTTTCAGAGGTTGGCATCAGCTCCAAGGTAGAAACTTTACTAATGGATAAAGATATTCACCAATTTCCT
TTAAAAGAAATTAAGAAGCATTTAGGTCCTTTAGAGAAACGTCTTGGTGTTAAATATGCCAATACACAAATCAAGGCTAT
TGAAACAGCTCTTAATTCGAATATTACGTTATTAACGGGTGGACCTGGTACGGGAAAAACAACCGTTGTACGAGGGATTG
TAGAACTATACTCTGAATTGCACGGGCTGTCCTTAGATCCCAAGGAATGGGCAAAGGAGCAAAAGCCTTTTCCAATTGTT
CTTGCTGCACCTACTGGTAGAGCAGCTAAGCGCTTAAGTGAATCTACAGAGCTGCCTGCAATGACCATTCATAGATTACT
TGGTTTTAATGGCCAAGAGGACACCGATACAGAAGGTAAAGAAATTGAAGGAAGACTAGTTATTATTGATGAGACCTCTA
TGCTAGATACTTGGCTAGGTCATCAGCTTTTAAAAGCTATCCCTAAGGATGCTCAGGTTATTTTTGTTGGTGACCAAGAC
CAGCTCCCACCTGTTGGTCCAGGTCAGGTATTAAAGGACTTACTGGCATCTAAAAGAATTCCAACAGTCGAACTGGTGGA
TATTTATCGACAATCAGAGGGATCCTCCATTATAGAATTAGCACATGAAATGAAACAAGGAAGTGTACCTGCTACACTTA
CCGCTAAAACAAAAGATCGATCCTTTATCAAGGCAACTACTGAACAAATCCCTAAAGTAGTAGAACAAGTGTTAAAGGCG
GCATTGTCTAAAGGTCAATCCATTCGAGAGATCCAAGTGCTAGCTCCTATGTATAGAGGGCCTGCTGGAATAGATGCGTT
AAATAAAATGATTCAAGAGATGGTCAATCCGAATACCGATGGAACACGTAAGGAAATGACCTTTGGAGATACAATTTATC
GAATAGGCGATAAAGTACTCCAGCTAGTAAATCAACCGGAAAGTAACGTTTTTAATGGTGATATGGGGGAAGTTGTTGCT
ATTTTTAGAGCCAATGAAACGGTTGAGAAGAAAGAGATGCTTGTTGTCTCTTTTGATGGCAATGAAGTTACGTATGAAAA
GAATGACTTAAATCAAATTACTCTAGCGTATTGTTGCTCCGTTCATAAATCACAGGGGAGTGAGTTCCAAACAGTCATTA
TGCCTGTTACTAGAAGCTATATGAAAATGCTTAGACGTAACTTGCTTTACACTGGAATTACTCGCGCTAAAAATTTCTTA
ATTCTTTGTGGAGATCCAGAGGTATTTAAATTTGGCGTTGAACGAACAGATGACTTGCAGCGTTTAACTACATTGAAAGA
ACGTTTATCAGATGAAGAAAAAGAAGAAATAGAGACAAAATCTACATCATCTGTATCTGCAGAAAAAGGTCGTACTGAAG
AGACATTGTCTGTTGAGGCTGATGAAGTGGACTCAACATATTTGTCAGCAGATAATTATCATTTAATCGATCCTCTTATA
GGCATGAAGGGGATTACCCCATATGAGTTCTTAGATACAGATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-547)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(587-658)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-244)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-723)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

53.884

99.631

0.537

Multiple sequence alignment