Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NSS80_RS11210 Genome accession   NZ_CP151985
Coordinates   2162753..2163388 (+) Length   211 a.a.
NCBI ID   WP_034280474.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0350     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2157753..2168388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS80_RS11170 (NSS80_11170) - 2157935..2159053 (+) 1119 WP_241770694.1 NADH-dependent flavin oxidoreductase -
  NSS80_RS11175 (NSS80_11175) - 2159107..2159613 (-) 507 WP_024422767.1 PTS glucose transporter subunit IIA -
  NSS80_RS11180 (NSS80_11180) - 2159784..2160203 (+) 420 WP_208946484.1 Hsp20/alpha crystallin family protein -
  NSS80_RS11185 (NSS80_11185) - 2160223..2160651 (-) 429 WP_317221977.1 YppG family protein -
  NSS80_RS11190 (NSS80_11190) - 2160760..2161140 (-) 381 WP_226340828.1 YppE family protein -
  NSS80_RS11195 (NSS80_11195) - 2161190..2161423 (-) 234 WP_223251001.1 DUF5446 family protein -
  NSS80_RS11200 (NSS80_11200) sspM 2161621..2161725 (+) 105 WP_024422772.1 acid-soluble spore protein SspM -
  NSS80_RS11205 (NSS80_11205) - 2161750..2162706 (-) 957 WP_317221976.1 DUF2515 domain-containing protein -
  NSS80_RS11210 (NSS80_11210) recU 2162753..2163388 (+) 636 WP_034280474.1 Holliday junction resolvase RecU Machinery gene
  NSS80_RS11215 (NSS80_11215) - 2163408..2166122 (+) 2715 WP_342498314.1 PBP1A family penicillin-binding protein -
  NSS80_RS11220 (NSS80_11220) - 2166159..2166668 (-) 510 WP_317221974.1 YpoC family protein -
  NSS80_RS11225 (NSS80_11225) nth 2166665..2167327 (-) 663 WP_034280464.1 endonuclease III -
  NSS80_RS11230 (NSS80_11230) - 2167345..2168049 (-) 705 WP_034280461.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24315.71 Da        Isoelectric Point: 9.8310

>NTDB_id=983494 NSS80_RS11210 WP_034280474.1 2162753..2163388(+) (recU) [Bacillus sp. FSL M8-0350]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
KNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESKQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=983494 NSS80_RS11210 WP_034280474.1 2162753..2163388(+) (recU) [Bacillus sp. FSL M8-0350]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATACAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACAAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAACGGGGTGTATAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAA
AAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.267

95.735

0.701

Multiple sequence alignment