Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NSQ60_RS16710 Genome accession   NZ_CP151976
Coordinates   3211494..3212891 (-) Length   465 a.a.
NCBI ID   WP_152649307.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0502     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3206494..3217891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ60_RS16675 (NSQ60_16675) flgL 3206694..3207602 (-) 909 WP_034281095.1 flagellar hook-associated protein FlgL -
  NSQ60_RS16680 (NSQ60_16680) flgK 3207612..3209132 (-) 1521 WP_024423618.1 flagellar hook-associated protein FlgK -
  NSQ60_RS16685 (NSQ60_16685) - 3209148..3209630 (-) 483 WP_024423619.1 flagellar protein FlgN -
  NSQ60_RS16690 (NSQ60_16690) flgM 3209649..3209912 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ60_RS16695 (NSQ60_16695) - 3209992..3210411 (-) 420 WP_034281098.1 TIGR03826 family flagellar region protein -
  NSQ60_RS16700 (NSQ60_16700) comFC 3210469..3211125 (-) 657 WP_235362365.1 ComF family protein Machinery gene
  NSQ60_RS16705 (NSQ60_16705) - 3211152..3211445 (-) 294 WP_024423623.1 competence protein ComFB -
  NSQ60_RS16710 (NSQ60_16710) comFA 3211494..3212891 (-) 1398 WP_152649307.1 DEAD/DEAH box helicase Machinery gene
  NSQ60_RS16715 (NSQ60_16715) - 3213012..3213854 (-) 843 WP_024423625.1 DegV family protein -
  NSQ60_RS16720 (NSQ60_16720) degU 3214070..3214759 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NSQ60_RS16725 (NSQ60_16725) degS 3214824..3215999 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  NSQ60_RS16730 (NSQ60_16730) - 3216220..3216888 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 52911.90 Da        Isoelectric Point: 10.0531

>NTDB_id=982991 NSQ60_RS16710 WP_152649307.1 3211494..3212891(-) (comFA) [Bacillus sp. FSL W8-0502]
MNMDKAMELMGQLHSRHLLTVETKCPQSNLDWLEEKGLVNRSPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCVYC
RSCIMMGKAAECGFLYEWTGPQMVETGRAELTWQGKLSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGVIITVLYGGSSQRFQIAPLVITTTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMRKNGGVRIYLSATPSKKMTREVSRGKLEAIKIPLRFHKHPLPVPTFHWIGHWKKKLKKNQLPPKVMNWMQ
RHIANKRRILLFVPSIAVMKKVTKILREQSLNVEGVSADDPDRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIAKMNDTAAKEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=982991 NSQ60_RS16710 WP_152649307.1 3211494..3212891(-) (comFA) [Bacillus sp. FSL W8-0502]
ATGAATATGGACAAAGCAATGGAACTAATGGGGCAGCTGCATTCACGCCATCTGCTCACCGTTGAAACAAAGTGCCCGCA
GTCCAATTTAGATTGGCTGGAGGAGAAGGGCTTAGTCAATCGGTCTCCAGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTATTTCGCTCATTCTCCATGTGAAGTGTGTCAAAAGGATTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAGCAGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGTAGAAACAGG
TCGAGCCGAATTAACATGGCAGGGAAAGCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAGAATGATTGAAGCTATTAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCACGGAATCGAATATGCATTA
AATCAAGGAATGAGTGTCTGTATTGCGACACCTAGAACAGATGTTGTGCTTGAACTCGAACCGCGGCTTAGAAAAGCATT
TCAAGGGGTGATAATTACCGTACTTTATGGAGGCAGTTCTCAAAGGTTTCAAATAGCACCGCTTGTGATCACCACAACCC
ACCAGCTGATGAGATACAAAAATGCTTTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAG
CGACTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACGGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTCGCGGAAAACTGGAAGCGATAAAAATTCCTTTGCGTTTTCACAAGCACCCATTACCCGTAC
CGACCTTTCATTGGATCGGACATTGGAAAAAGAAATTAAAAAAGAACCAGCTGCCCCCTAAAGTGATGAATTGGATGCAG
CGACATATTGCAAATAAGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTGTCATGAAGAAGGTAACGAAGATTCTACG
AGAACAATCCTTAAACGTGGAGGGAGTATCTGCCGATGATCCGGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACCATTCCAAATGTTCAAGTGGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGACGGGTAGGCAGACATCCGGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGCAAAAATGAATGATACGGCTG
CAAAAGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-265)

Helicase conserved C-terminal domain (Helicase_C)

(324-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.412

98.065

0.514

Multiple sequence alignment