Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NSQ60_RS00255 Genome accession   NZ_CP151976
Coordinates   47071..47361 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0502     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42071..52361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ60_RS00215 (NSQ60_00215) - 42103..42432 (+) 330 WP_024425625.1 cyclic-di-AMP receptor -
  NSQ60_RS00220 (NSQ60_00220) - 42445..42885 (+) 441 WP_024425626.1 YaaR family protein -
  NSQ60_RS00225 (NSQ60_00225) holB 42897..43886 (+) 990 WP_024425627.1 DNA polymerase III subunit delta' -
  NSQ60_RS00230 (NSQ60_00230) - 43889..44716 (+) 828 WP_024425628.1 stage 0 sporulation family protein -
  NSQ60_RS00235 (NSQ60_00235) yabA 44731..45084 (+) 354 WP_024425629.1 DNA replication initiation control protein YabA -
  NSQ60_RS00240 (NSQ60_00240) - 45140..45883 (+) 744 WP_024427205.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NSQ60_RS00245 (NSQ60_00245) - 45870..46169 (+) 300 WP_034284140.1 GIY-YIG nuclease family protein -
  NSQ60_RS00250 (NSQ60_00250) rsmI 46144..47025 (+) 882 WP_046314435.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NSQ60_RS00255 (NSQ60_00255) abrB 47071..47361 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NSQ60_RS00260 (NSQ60_00260) metG 47882..49882 (+) 2001 WP_046314439.1 methionine--tRNA ligase -
  NSQ60_RS00265 (NSQ60_00265) - 49963..50730 (+) 768 WP_046314442.1 TatD family hydrolase -
  NSQ60_RS00270 (NSQ60_00270) - 50975..52177 (+) 1203 WP_041105711.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=982940 NSQ60_RS00255 WP_087975202.1 47071..47361(-) (abrB) [Bacillus sp. FSL W8-0502]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=982940 NSQ60_RS00255 WP_087975202.1 47071..47361(-) (abrB) [Bacillus sp. FSL W8-0502]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GTTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAGCTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATTCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment