Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AAFX12_RS04645 Genome accession   NZ_CP151938
Coordinates   982081..983487 (+) Length   468 a.a.
NCBI ID   WP_064368650.1    Uniprot ID   A0AAW9ANZ6
Organism   Vibrio alginolyticus strain TBV025     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 977081..988487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX12_RS04640 (AAFX12_04640) uvrB 979759..981789 (+) 2031 WP_017636056.1 excinuclease ABC subunit UvrB -
  AAFX12_RS04645 (AAFX12_04645) luxO 982081..983487 (+) 1407 WP_064368650.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AAFX12_RS04650 (AAFX12_04650) luxU 983484..983828 (+) 345 WP_005380770.1 quorum-sensing phosphorelay protein LuxU -
  AAFX12_RS04655 (AAFX12_04655) - 983966..984862 (-) 897 WP_213987752.1 YvcK family protein -
  AAFX12_RS04660 (AAFX12_04660) moaA 985161..986150 (+) 990 WP_005380776.1 GTP 3',8-cyclase MoaA -
  AAFX12_RS04665 (AAFX12_04665) moaB 986252..986764 (+) 513 WP_005388935.1 molybdenum cofactor biosynthesis protein B -
  AAFX12_RS04670 (AAFX12_04670) moaC 986791..987270 (+) 480 WP_005380779.1 cyclic pyranopterin monophosphate synthase MoaC -
  AAFX12_RS04675 (AAFX12_04675) moaD 987267..987524 (+) 258 WP_005388938.1 molybdopterin synthase sulfur carrier subunit -
  AAFX12_RS04680 (AAFX12_04680) moaE 987526..987981 (+) 456 WP_017821374.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52120.78 Da        Isoelectric Point: 6.2547

>NTDB_id=981360 AAFX12_RS04645 WP_064368650.1 982081..983487(+) (luxO) [Vibrio alginolyticus strain TBV025]
MQQKPEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFIRFAPDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPL
SVAKLIEPKAMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=981360 AAFX12_RS04645 WP_064368650.1 982081..983487(+) (luxO) [Vibrio alginolyticus strain TBV025]
ATGCAACAAAAACCCGAAGGCCCAAAGTCTCGTTACCTTTTAATGGTCGAGGACACCGCATCTGTTGCGGCTCTGTACCG
CTCATACCTGACACCGCTTGGCATAGATATCAATATTGTCGGCACAGGTAGGGATGCCATTGAGAGCCTAAATCATCGAA
TTCCAGATCTTATTTTACTCGATCTCCGTCTGCCAGATATGACGGGGATGGACGTTTTACATGCCGTTAAAAAGAGTCAT
CCCGACGTACCTATAATCTTTATGACCGCTCACGGTTCTATCGATACCGCTGTCGAGGCCATGCGTCATGGCTCACAAGA
CTTTCTAATTAAACCGTGTGAAGCAGACCGTTTACGTGTCACGGTTAACAATGCAATTCGTAAAGCGACCAAGCTAAAAA
ATGAAGCCGATAATCCAGGCAATCAGAGCTATCAGGGGTTTATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGTACG
ATAGATTCCGCGGCGAGCAGTAAAGCGAGTATTTTTATCACTGGTGAAAGTGGTACTGGTAAAGAGGTATGTGCCGAGGC
AATCCACGCAGCAAGTAAACGTGGTGACAAACCTTTTATTGCAATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTAAAAGGGGCCTTTACTGGCGCTGCGAATGATCGTCAAGGGGCAGCTGAGTTAGCGGATGGC
GGCACACTTTTTCTAGATGAGCTTTGTGAGATGGACTTGGATTTACAAACCAAGTTGCTACGATTTATTCAAACGGGCAC
ATTCCAAAAAGTGGGTTCCTCAAAAATGAAGAGCGTGGATGTGCGCTTTGTTTGTGCCACTAACCGTGATCCTTGGAAAG
AGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTACCGCCTTTACGCGAA
CGAGGCGAAGATGTTATTGAAATTGCATACTCACTGTTAGGTTACATGTCACACGAAGAAGGAAAAAGCTTCATACGTTT
TGCGCCTGATGTCATCGAGCGATTCAACAGCTATGAGTGGCCGGGTAACGTTCGTCAGTTACAAAACGTGCTACGCAATA
TCGTTGTTCTAAACAACGGTAAAGAGATTACGTTGGACATGTTACCGCCACCGTTGAATCAACCGCTTGACCGTCCGTTG
TCTGTGGCTAAATTAATTGAGCCGAAAGCGATGACCGCATCTGAGATTATGCCATTATGGATGACGGAAAAAATGGCAAT
CGAGCAAGCGATTGAAGCATGTGATGGCAATATTCCTCGAGCGGCGGGATACCTTGATGTCAGTCCGTCGACGATTTACC
GCAAGTTACAGGCATGGAACGGCAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.637

95.94

0.831

Multiple sequence alignment