Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | AAFA25_RS11250 | Genome accession | NZ_CP151694 |
| Coordinates | 2357103..2357483 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836910.1 | Uniprot ID | A0AAQ1AB09 |
| Organism | Acinetobacter baumannii strain F19-10-CH3 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2352103..2362483
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFA25_RS11220 (AAFA25_11220) | tadA | 2352222..2352725 (-) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
| AAFA25_RS11225 (AAFA25_11225) | - | 2352732..2353856 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| AAFA25_RS11230 (AAFA25_11230) | ung | 2353853..2354566 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| AAFA25_RS11235 (AAFA25_11235) | - | 2354617..2355213 (-) | 597 | WP_000908451.1 | 6-carboxytetrahydropterin synthase | - |
| AAFA25_RS11240 (AAFA25_11240) | gspK | 2355443..2356402 (-) | 960 | WP_000301481.1 | type II secretion system minor pseudopilin GspK | - |
| AAFA25_RS11245 (AAFA25_11245) | xcpW | 2356402..2357103 (-) | 702 | WP_000594572.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| AAFA25_RS11250 (AAFA25_11250) | xcpV | 2357103..2357483 (-) | 381 | WP_000836910.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| AAFA25_RS11255 (AAFA25_11255) | - | 2357473..2358027 (-) | 555 | WP_000841379.1 | type II secretion system protein | - |
| AAFA25_RS11260 (AAFA25_11260) | - | 2358037..2358645 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| AAFA25_RS11265 (AAFA25_11265) | - | 2358683..2359456 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| AAFA25_RS11270 (AAFA25_11270) | - | 2359474..2359815 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| AAFA25_RS11275 (AAFA25_11275) | - | 2359827..2360807 (-) | 981 | WP_001075418.1 | DNA polymerase III subunit delta' | - |
| AAFA25_RS11280 (AAFA25_11280) | kdsB | 2360819..2361580 (-) | 762 | WP_000680701.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13957.17 Da Isoelectric Point: 9.8004
>NTDB_id=979995 AAFA25_RS11250 WP_000836910.1 2357103..2357483(-) (xcpV) [Acinetobacter baumannii strain F19-10-CH3]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=979995 AAFA25_RS11250 WP_000836910.1 2357103..2357483(-) (xcpV) [Acinetobacter baumannii strain F19-10-CH3]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |