Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AAFA27_RS01610 | Genome accession | NZ_CP151688 |
| Coordinates | 340825..341310 (+) | Length | 161 a.a. |
| NCBI ID | WP_220042346.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain 40288-CIRI | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 335825..346310
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFA27_RS01590 (AAFA27_01590) | - | 337218..338105 (+) | 888 | WP_001017328.1 | metal-dependent hydrolase | - |
| AAFA27_RS01595 (AAFA27_01595) | - | 338235..338825 (+) | 591 | WP_000846931.1 | LemA family protein | - |
| AAFA27_RS01600 (AAFA27_01600) | - | 338847..339929 (+) | 1083 | WP_001246384.1 | TPM domain-containing protein | - |
| AAFA27_RS01605 (AAFA27_01605) | - | 339923..340483 (+) | 561 | WP_000258950.1 | TPM domain-containing protein | - |
| AAFA27_RS01610 (AAFA27_01610) | pilA | 340825..341310 (+) | 486 | WP_220042346.1 | pilin | Machinery gene |
| AAFA27_RS01615 (AAFA27_01615) | - | 341486..343114 (+) | 1629 | WP_002015646.1 | O-antigen ligase family protein | - |
| AAFA27_RS01620 (AAFA27_01620) | bfr | 343156..343620 (-) | 465 | WP_000678123.1 | bacterioferritin | - |
| AAFA27_RS01625 (AAFA27_01625) | - | 343866..344060 (-) | 195 | WP_000289091.1 | bacterioferritin-associated ferredoxin | - |
| AAFA27_RS01630 (AAFA27_01630) | - | 344270..344653 (-) | 384 | WP_000090000.1 | RidA family protein | - |
Sequence
Protein
Download Length: 161 a.a. Molecular weight: 16621.94 Da Isoelectric Point: 5.0937
>NTDB_id=979835 AAFA27_RS01610 WP_220042346.1 340825..341310(+) (pilA) [Acinetobacter baumannii strain 40288-CIRI]
MNAQKGFTLIELMIVVAIIGILAAIAIPQYQNYVGRSNVAAAVQTLTSNKSGLESYVMEFGEFPDGTTAPAAGDPTANPP
VAATRGERPQDLSIVNTTLGSIALGDKNNGAGIITLTFATGNPGIKGKKVQLARDANGTWTCVTDVDEKFAAKACPVGTP
Q
MNAQKGFTLIELMIVVAIIGILAAIAIPQYQNYVGRSNVAAAVQTLTSNKSGLESYVMEFGEFPDGTTAPAAGDPTANPP
VAATRGERPQDLSIVNTTLGSIALGDKNNGAGIITLTFATGNPGIKGKKVQLARDANGTWTCVTDVDEKFAAKACPVGTP
Q
Nucleotide
Download Length: 486 bp
>NTDB_id=979835 AAFA27_RS01610 WP_220042346.1 340825..341310(+) (pilA) [Acinetobacter baumannii strain 40288-CIRI]
ATGAATGCACAAAAAGGTTTTACGTTAATTGAACTCATGATCGTGGTTGCCATTATCGGTATCTTGGCAGCAATTGCGAT
TCCGCAATATCAAAATTATGTGGGTCGCTCTAATGTAGCAGCAGCTGTCCAAACACTTACATCAAATAAATCTGGTTTAG
AAAGTTATGTAATGGAATTTGGTGAATTCCCTGACGGTACTACGGCTCCAGCTGCAGGAGATCCAACAGCGAACCCACCA
GTAGCTGCTACTCGAGGTGAGCGACCACAGGATTTAAGTATTGTTAATACAACATTAGGAAGTATTGCTTTAGGTGATAA
AAACAATGGAGCTGGCATTATCACTTTAACATTTGCGACAGGCAATCCTGGTATTAAAGGCAAAAAGGTTCAGTTAGCTC
GTGATGCAAATGGAACTTGGACATGTGTAACTGATGTTGATGAGAAATTTGCAGCCAAAGCTTGTCCAGTAGGAACACCA
CAATAA
ATGAATGCACAAAAAGGTTTTACGTTAATTGAACTCATGATCGTGGTTGCCATTATCGGTATCTTGGCAGCAATTGCGAT
TCCGCAATATCAAAATTATGTGGGTCGCTCTAATGTAGCAGCAGCTGTCCAAACACTTACATCAAATAAATCTGGTTTAG
AAAGTTATGTAATGGAATTTGGTGAATTCCCTGACGGTACTACGGCTCCAGCTGCAGGAGATCCAACAGCGAACCCACCA
GTAGCTGCTACTCGAGGTGAGCGACCACAGGATTTAAGTATTGTTAATACAACATTAGGAAGTATTGCTTTAGGTGATAA
AAACAATGGAGCTGGCATTATCACTTTAACATTTGCGACAGGCAATCCTGGTATTAAAGGCAAAAAGGTTCAGTTAGCTC
GTGATGCAAATGGAACTTGGACATGTGTAACTGATGTTGATGAGAAATTTGCAGCCAAAGCTTGTCCAGTAGGAACACCA
CAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
48.75 |
99.379 |
0.484 |
| pilA | Pseudomonas aeruginosa PAK |
46.541 |
98.758 |
0.46 |
| pilA | Vibrio cholerae C6706 |
45.223 |
97.516 |
0.441 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
45.223 |
97.516 |
0.441 |
| pilA | Vibrio cholerae strain A1552 |
45.223 |
97.516 |
0.441 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.272 |
100 |
0.385 |
| comP | Acinetobacter baylyi ADP1 |
37.342 |
98.137 |
0.366 |
| pilE | Neisseria gonorrhoeae MS11 |
36.478 |
98.758 |
0.36 |