Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AADZ70_RS15200 Genome accession   NZ_CP151679
Coordinates   3022563..3022853 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus sp. YBsi01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3017563..3027853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ70_RS15160 (AADZ70_15160) darA 3017580..3017909 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  AADZ70_RS15165 (AADZ70_15165) - 3017922..3018362 (+) 441 WP_016936512.1 DUF327 family protein -
  AADZ70_RS15170 (AADZ70_15170) holB 3018374..3019363 (+) 990 WP_016936513.1 DNA polymerase III subunit delta' -
  AADZ70_RS15175 (AADZ70_15175) ricT 3019366..3020193 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  AADZ70_RS15180 (AADZ70_15180) yabA 3020208..3020567 (+) 360 WP_016936514.1 replication initiation-control protein YabA -
  AADZ70_RS15185 (AADZ70_15185) - 3020628..3021371 (+) 744 WP_045926503.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AADZ70_RS15190 (AADZ70_15190) - 3021358..3021657 (+) 300 WP_045926504.1 GIY-YIG nuclease family protein -
  AADZ70_RS15195 (AADZ70_15195) rsmI 3021632..3022513 (+) 882 WP_045926505.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AADZ70_RS15200 (AADZ70_15200) abrB 3022563..3022853 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  AADZ70_RS15205 (AADZ70_15205) metG 3023337..3025329 (+) 1993 Protein_2969 methionine--tRNA ligase -
  AADZ70_RS15210 (AADZ70_15210) - 3025405..3026172 (+) 768 WP_342007289.1 TatD family hydrolase -
  AADZ70_RS15215 (AADZ70_15215) - 3026307..3027632 (+) 1326 WP_342007290.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=979716 AADZ70_RS15200 WP_169510469.1 3022563..3022853(-) (abrB) [Bacillus sp. YBsi01]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=979716 AADZ70_RS15200 WP_169510469.1 3022563..3022853(-) (abrB) [Bacillus sp. YBsi01]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAATCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment