Detailed information NTG0097477

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: R8474_RS03110
• Genome accession: NZ_AP026914
• Coordinates: 606603..607073 (+)
• Length: 156 a.a.
• NCBI ID: WP_000609587.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PZ900700003
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 601603..612073

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8474_RS03080 (PC0003_05940)	-	601887..602435 (-)	549	WP_317642008.1	NADPH-dependent FMN reductase	-
R8474_RS03085 (PC0003_05950)	-	602756..603244 (+)	489	WP_000747253.1	DUF5590 domain-containing protein	-
R8474_RS03090 (PC0003_05960)	-	603241..604428 (+)	1188	WP_000777786.1	pyridoxal phosphate-dependent aminotransferase	-
R8474_RS03095 (PC0003_05970)	-	604421..604786 (+)	366	WP_000565217.1	VOC family protein	-
R8474_RS03100 (PC0003_05980)	asnS	604805..606148 (+)	1344	WP_000167151.1	asparagine--tRNA ligase	-
R8474_RS03105 (PC0003_05990)	rpsF	606301..606591 (+)	291	WP_001151785.1	30S ribosomal protein S6	-
R8474_RS03110 (PC0003_06000)	ssbA	606603..607073 (+)	471	WP_000609587.1	single-stranded DNA-binding protein SsbA	Machinery gene
R8474_RS03115 (PC0003_06010)	rpsR	607105..607344 (+)	240	WP_000068664.1	30S ribosomal protein S18	-
R8474_RS03120 (PC0003_06020)	-	607639..609039 (+)	1401	WP_000339028.1	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	-
R8474_RS03125 (PC0003_06030)	-	609041..609400 (+)	360	WP_000689596.1	S1 RNA-binding domain-containing protein	-
R8474_RS03130 (PC0003_06040)	-	609454..610203 (+)	750	WP_000390783.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
R8474_RS03135 (PC0003_06050)	-	610193..610492 (+)	300	WP_000349600.1	GIY-YIG nuclease family protein	-
R8474_RS03140 (PC0003_06060)	-	610563..611498 (+)	936	WP_000036043.1	manganese-dependent inorganic pyrophosphatase	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17363.27 Da
• Isoelectric Point: 5.2065

>NTDB_id=97477 R8474_RS03110 WP_000609587.1 606603..607073(+) (ssbA) [Streptococcus pneumoniae strain PZ900700003]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRIFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=97477 R8474_RS03110 WP_000609587.1 606603..607073(+) (ssbA) [Streptococcus pneumoniae strain PZ900700003]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTATATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATTAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	55.233	100	0.609
ssb	Latilactobacillus sakei subsp. sakei 23K	54.118	100	0.59
ssbB	Bacillus subtilis subsp. subtilis str. 168	55.66	67.949	0.378
ssbB	Streptococcus sobrinus strain NIDR 6715-7	54.128	69.872	0.378
ssbB/cilA	Streptococcus pneumoniae TIGR4	53.211	69.872	0.372
ssbB/cilA	Streptococcus mitis SK321	52.294	69.872	0.365
ssbB/cilA	Streptococcus mitis NCTC 12261	52.294	69.872	0.365
ssbB/cilA	Streptococcus pneumoniae Rx1	52.294	69.872	0.365
ssbB/cilA	Streptococcus pneumoniae D39	52.294	69.872	0.365
ssbB/cilA	Streptococcus pneumoniae R6	52.294	69.872	0.365