Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | OO778_RS11935 | Genome accession | NZ_AP026765 |
| Coordinates | 2513811..2514095 (-) | Length | 94 a.a. |
| NCBI ID | WP_031780151.1 | Uniprot ID | - |
| Organism | Vibrio sp. STUT-A16 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2508811..2519095
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO778_RS11910 (VspSTUT16_22110) | - | 2509309..2510523 (+) | 1215 | WP_005390543.1 | pyridoxal phosphate-dependent aminotransferase | - |
| OO778_RS11915 (VspSTUT16_22120) | yfbR | 2510614..2511198 (+) | 585 | WP_047009477.1 | 5'-deoxynucleotidase | - |
| OO778_RS11920 (VspSTUT16_22130) | - | 2511214..2512536 (+) | 1323 | WP_256955859.1 | anti-phage deoxyguanosine triphosphatase | - |
| OO778_RS11925 | - | 2512543..2513157 (-) | 615 | WP_005390535.1 | DTW domain-containing protein | - |
| OO778_RS11930 (VspSTUT16_22150) | rrtA | 2513161..2513712 (+) | 552 | WP_047009480.1 | rhombosortase | - |
| OO778_RS11935 (VspSTUT16_22160) | comEA | 2513811..2514095 (-) | 285 | WP_031780151.1 | ComEA family DNA-binding protein | Machinery gene |
| OO778_RS11940 (VspSTUT16_22170) | ppiD | 2514320..2516179 (-) | 1860 | WP_005390530.1 | peptidylprolyl isomerase | - |
| OO778_RS11945 (VspSTUT16_22180) | - | 2516381..2516653 (-) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10322.94 Da Isoelectric Point: 5.1423
>NTDB_id=96860 OO778_RS11935 WP_031780151.1 2513811..2514095(-) (comEA) [Vibrio sp. STUT-A16]
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=96860 OO778_RS11935 WP_031780151.1 2513811..2514095(-) (comEA) [Vibrio sp. STUT-A16]
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCGCCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACCGTAAATATCAACACGGCCTCTGCTGAAGAAATAGCGACCATGTTGAAAGGTATTGGTGAGAAGA
AAGCGCAGAGTATCGTGGACTACCGCGAGGAGCATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATT
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCGCCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACCGTAAATATCAACACGGCCTCTGCTGAAGAAATAGCGACCATGTTGAAAGGTATTGGTGAGAAGA
AAGCGCAGAGTATCGTGGACTACCGCGAGGAGCATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATT
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
89.362 |
100 |
0.894 |
| comEA | Vibrio campbellii strain DS40M4 |
74.737 |
100 |
0.755 |
| comEA | Vibrio cholerae C6706 |
61.957 |
97.872 |
0.606 |
| comEA | Vibrio cholerae strain A1552 |
61.957 |
97.872 |
0.606 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
49.383 |
86.17 |
0.426 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
58.065 |
65.957 |
0.383 |
| comEA/celA/cilE | Streptococcus pneumoniae TIGR4 |
39.326 |
94.681 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comEA | Legionella pneumophila strain ERS1305867 |
36.842 |
100 |
0.372 |
| comEA | Legionella pneumophila str. Paris |
36.842 |
100 |
0.372 |