Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DAETH_RS09255 Genome accession   NZ_AP026560
Coordinates   1844871..1845503 (-) Length   210 a.a.
NCBI ID   WP_264774613.1    Uniprot ID   -
Organism   Deinococcus aetherius strain ST0316     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1839871..1850503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DAETH_RS09230 (DAETH_18530) - 1840957..1841499 (-) 543 WP_264774608.1 GerMN domain-containing protein -
  DAETH_RS09235 (DAETH_18540) - 1841496..1842905 (-) 1410 WP_264774609.1 N-acetylmuramoyl-L-alanine amidase -
  DAETH_RS09240 (DAETH_18550) smpB 1842902..1843333 (-) 432 WP_264774610.1 SsrA-binding protein SmpB -
  DAETH_RS09245 (DAETH_18560) - 1843565..1844257 (-) 693 WP_264774611.1 DUF2259 domain-containing protein -
  DAETH_RS09250 (DAETH_18570) - 1844297..1844824 (-) 528 WP_264774612.1 hypothetical protein -
  DAETH_RS09255 (DAETH_18580) comF 1844871..1845503 (-) 633 WP_264774613.1 ComF family protein Machinery gene
  DAETH_RS09260 (DAETH_18590) - 1845505..1846029 (-) 525 WP_264774614.1 hypothetical protein -
  DAETH_RS09265 (DAETH_18600) - 1846316..1846609 (+) 294 WP_264774615.1 hypothetical protein -
  DAETH_RS09270 (DAETH_18610) - 1846670..1847086 (-) 417 WP_264774616.1 hypothetical protein -
  DAETH_RS09275 (DAETH_18620) - 1847170..1848192 (+) 1023 WP_264774617.1 imelysin family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 21895.52 Da        Isoelectric Point: 11.9645

>NTDB_id=96409 DAETH_RS09255 WP_264774613.1 1844871..1845503(-) (comF) [Deinococcus aetherius strain ST0316]
MGAVAGLLRALVPRPCPGCDAQLGREAGLCPACRARLVPRVEVYSPLWLRPEGHLVTLGPYRGVTRRAVRALKFGGARDL
AGALGGALAAGVPAGWNVRSVVPVPLHSARERERGFNQAALLAGAVAASLNVPAVPALRRTRATGQQARLHAHERAGNLA
GAFAADPRRLPSGPVLLLDDVMTTGSTLLACRDALHAAGVREVRFAVVAR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=96409 DAETH_RS09255 WP_264774613.1 1844871..1845503(-) (comF) [Deinococcus aetherius strain ST0316]
GTGGGCGCCGTCGCGGGCCTGCTGCGCGCCCTCGTTCCCCGCCCCTGCCCCGGCTGCGACGCCCAGCTCGGGCGGGAGGC
GGGGCTGTGCCCGGCGTGCCGCGCCCGGCTCGTGCCCCGGGTGGAGGTGTACTCGCCGCTGTGGCTGCGTCCCGAGGGGC
ACCTCGTCACCCTGGGGCCCTACCGGGGGGTGACCCGGCGGGCGGTGCGCGCCCTGAAGTTCGGCGGCGCGCGAGACCTG
GCGGGTGCCCTTGGCGGGGCGCTGGCCGCTGGCGTTCCGGCGGGGTGGAACGTCCGCTCGGTCGTCCCCGTGCCCCTACA
CTCCGCCCGCGAGCGGGAGCGCGGGTTCAACCAGGCCGCCCTTCTCGCCGGAGCCGTCGCCGCCTCGCTGAACGTGCCCG
CCGTCCCCGCCCTGCGCCGCACCCGCGCGACCGGACAGCAGGCCCGCCTCCACGCGCACGAGCGGGCGGGAAACCTCGCC
GGGGCCTTCGCCGCCGACCCGCGCCGCCTGCCCTCCGGCCCGGTCCTGCTGCTCGACGACGTGATGACGACCGGGAGCAC
CCTGCTGGCGTGCCGGGACGCGCTGCACGCGGCGGGGGTCCGGGAAGTGCGCTTCGCGGTGGTCGCCCGCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

68.627

97.143

0.667

Multiple sequence alignment