Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AB6L24_RS12880 Genome accession   NZ_CP173703
Coordinates   3146707..3148059 (+) Length   450 a.a.
NCBI ID   WP_380853011.1    Uniprot ID   -
Organism   Streptomyces sp. RK9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3141707..3153059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - rarA 3146707..3148059 (+) 1353 - - Machinery gene

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 48209.68 Da        Isoelectric Point: 6.7488

>NTDB_id=961731 AB6L24_RS12880 WP_380853011.1 3146707..3148059(+) (rarA) [Streptomyces sp. RK9]
MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRTLDEVVGQQHLLRPGSPLRRLVEGSGGPAGPSSVFLWGPPGIGKTTLAYV
VSKATNKRFVELSAITAGVKEVRAVIDGARRAMGGHGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFS
VISPLLSRSLLLTLEPLTDDDLRGLLKRALTDERGLGGAVTLPDDAEEHLLRIAGGDARRALTALEAGAGSALSKGEKEI
TLQSLEESVDRAAVKYDRAGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTALP
TAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATTAIGAALEDVRKGHAGPVPPHLRDGHYKGAAKLGHAQGYVYP
HDLPEGIAAQEYAPEALRDREYYTPTRHGAEARYADAVEWTRKHLGRKRP

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=961731 AB6L24_RS12880 WP_380853011.1 3146707..3148059(+) (rarA) [Streptomyces sp. RK9]
GTGGAGCCCGACCTGTTCACCGCCGCAGCCGAAGACCGCCAGGAGAAGGACCCGTCCAGCAGTCCCCTGGCCGTCCGGAT
GCGCCCGCGCACCCTTGACGAAGTCGTCGGACAGCAGCATCTGCTCCGGCCCGGATCGCCGCTGCGCAGACTCGTCGAGG
GCAGTGGCGGCCCGGCCGGACCGTCGTCGGTGTTCCTCTGGGGCCCGCCCGGCATCGGCAAGACGACCCTGGCGTACGTG
GTCTCCAAGGCGACGAACAAGCGCTTCGTGGAGCTGTCCGCGATCACCGCGGGCGTCAAGGAGGTCCGTGCGGTCATCGA
CGGCGCCCGCCGCGCGATGGGCGGCCACGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGGCCC
AGCAGGACTCCCTGCTGCCCGCCGTCGAGAACCGCTGGGTGACGCTGATCGCCGCGACGACGGAGAACCCGTACTTCTCC
GTGATCTCCCCGCTCCTGTCCCGCTCCCTGCTGCTCACCCTCGAGCCGCTCACGGACGACGACCTGCGCGGACTCCTGAA
GCGGGCCCTCACCGACGAGCGCGGCCTCGGCGGCGCCGTCACCCTGCCCGATGACGCCGAGGAGCACCTCCTGCGGATCG
CGGGCGGCGACGCCCGGCGTGCGCTCACCGCCCTCGAAGCGGGCGCGGGCTCGGCCCTCTCCAAGGGCGAGAAGGAGATC
ACGCTCCAGTCGCTCGAGGAGTCCGTCGACCGGGCCGCGGTCAAGTACGACCGCGCCGGAGACCAGCACTACGACGTCGC
GAGCGCGCTGATCAAGTCCATCCGCGGCTCGGACGTGGACGCGGCCCTGCACTATCTGGCCCGCATGATCGAGGCGGGCG
AGGACCCCCGCTTCATCGCCCGCCGGCTGATGATCTCGGCCAGCGAGGACATCGGCCTCGCCGACCCGACGGCCCTGCCC
ACCGCCGTCGCCGCCGCCCAGGCCGTCGCCATGATCGGCTTCCCGGAGGCGGCCCTCACCCTCAGCCACGCCACCATCGC
CCTCGCCCTGGCCCCGAAGTCGAACGCCGCGACGACGGCCATAGGCGCCGCCCTCGAAGACGTCCGCAAGGGCCACGCGG
GCCCCGTCCCGCCACACCTGCGCGACGGCCACTACAAGGGCGCGGCCAAGCTGGGGCACGCCCAGGGCTATGTCTATCCG
CACGACCTGCCCGAGGGCATCGCCGCCCAGGAGTACGCCCCGGAGGCCCTGCGCGACCGCGAGTACTACACCCCCACCCG
GCACGGCGCCGAGGCACGGTACGCCGACGCCGTGGAGTGGACCAGGAAGCACCTCGGCCGCAAGCGGCCCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(64-168)

MgsA AAA+ ATPase C terminal (MgsA_C)

(276-440)

AAA C-terminal domain (AAA_assoc_2)

(199-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.444

96

0.427