Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   WHP60_RS05675 Genome accession   NZ_CP148162
Coordinates   1090105..1091064 (+) Length   319 a.a.
NCBI ID   WP_002852903.1    Uniprot ID   A0A5Y6P8U5
Organism   Campylobacter jejuni strain Z1323HCJ0038     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1085105..1096064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP60_RS05640 (WHP60_05640) neuC 1085695..1086819 (+) 1125 WP_002859249.1 UDP-N-acetylglucosamine 2-epimerase -
  WHP60_RS05645 (WHP60_05645) - 1086812..1087435 (+) 624 WP_171822998.1 glycosyltransferase -
  WHP60_RS05650 (WHP60_05650) - 1087428..1087760 (+) 333 WP_019260376.1 hypothetical protein -
  WHP60_RS05655 (WHP60_05655) - 1087757..1088422 (+) 666 WP_228567890.1 acylneuraminate cytidylyltransferase family protein -
  WHP60_RS05660 (WHP60_05660) - 1088410..1088856 (+) 447 WP_002852791.1 hypothetical protein -
  WHP60_RS05665 (WHP60_05665) - 1088901..1089242 (+) 342 WP_002852868.1 hypothetical protein -
  WHP60_RS05670 (WHP60_05670) - 1089234..1090046 (-) 813 WP_002852816.1 glycosyltransferase family 2 protein -
  WHP60_RS05675 (WHP60_05675) waaF 1090105..1091064 (+) 960 WP_002852903.1 lipopolysaccharide heptosyltransferase II Regulator
  WHP60_RS05680 (WHP60_05680) gmhA 1091045..1091605 (-) 561 WP_002852775.1 D-sedoheptulose 7-phosphate isomerase -
  WHP60_RS05685 (WHP60_05685) rfaE1 1091602..1092987 (-) 1386 WP_002852777.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  WHP60_RS05690 (WHP60_05690) rfaD 1092980..1093933 (-) 954 WP_002852832.1 ADP-glyceromanno-heptose 6-epimerase -
  WHP60_RS05695 (WHP60_05695) gmhB 1093934..1094494 (-) 561 WP_002878815.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  WHP60_RS05700 (WHP60_05700) - 1094576..1094878 (+) 303 WP_002852762.1 cytochrome c -
  WHP60_RS05705 (WHP60_05705) ccoS 1094901..1095107 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36766.44 Da        Isoelectric Point: 10.4054

>NTDB_id=952038 WHP60_RS05675 WP_002852903.1 1090105..1091064(+) (waaF) [Campylobacter jejuni strain Z1323HCJ0038]
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKKLGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=952038 WHP60_RS05675 WP_002852903.1 1090105..1091064(+) (waaF) [Campylobacter jejuni strain Z1323HCJ0038]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACACCATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTATAAACAAGCCCTATCTTTACGCAAAAAACTTGGTAAAATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y6P8U5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.984

100

0.95