Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   WGK56_RS00280 Genome accession   NZ_CP148001
Coordinates   58551..59267 (-) Length   238 a.a.
NCBI ID   WP_012055311.1    Uniprot ID   -
Organism   Haemophilus influenzae strain AR2632     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 53551..64267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGK56_RS00260 (WGK56_00260) nrdR 53643..54092 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  WGK56_RS00265 (WGK56_00265) recC 54147..57527 (-) 3381 WP_061659653.1 exodeoxyribonuclease V subunit gamma -
  WGK56_RS00270 (WGK56_00270) comQ 57573..57860 (-) 288 WP_005648029.1 DUF5374 domain-containing protein Machinery gene
  WGK56_RS00275 (WGK56_00275) comP 57853..58536 (-) 684 WP_015701955.1 DUF2572 family protein Machinery gene
  WGK56_RS00280 (WGK56_00280) comO 58551..59267 (-) 717 WP_012055311.1 PulJ/GspJ family protein Machinery gene
  WGK56_RS00285 (WGK56_00285) comN 59267..59779 (-) 513 WP_013526183.1 pilus assembly FimT family protein Machinery gene
  WGK56_RS00290 (WGK56_00290) suhB 59979..60782 (+) 804 WP_015701954.1 inositol-1-monophosphatase -
  WGK56_RS00295 (WGK56_00295) nrfE 60891..62798 (+) 1908 WP_015701953.1 heme lyase NrfEFG subunit NrfE -
  WGK56_RS00300 (WGK56_00300) - 62798..63328 (+) 531 WP_015701952.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26745.09 Da        Isoelectric Point: 9.5508

>NTDB_id=949928 WGK56_RS00280 WP_012055311.1 58551..59267(-) (comO) [Haemophilus influenzae strain AR2632]
MMKVLLKGQTLLALMISLSLSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCVGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=949928 WGK56_RS00280 WP_012055311.1 58551..59267(-) (comO) [Haemophilus influenzae strain AR2632]
ATGATGAAAGTCTTATTAAAAGGGCAAACCCTATTAGCGCTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACACATGCTATTACATTTAAAGTTACAGGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTGTTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

99.16

100

0.992