Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   V9W62_RS05310 Genome accession   NZ_CP146763
Coordinates   1095027..1095605 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain AP81     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1090027..1100605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W62_RS05290 (V9W62_05290) - 1090528..1091820 (-) 1293 WP_043021330.1 globin-coupled sensor protein -
  V9W62_RS05295 (V9W62_05295) - 1091942..1093465 (-) 1524 WP_043021329.1 FAD-dependent oxidoreductase -
  V9W62_RS05300 (V9W62_05300) - 1093590..1094447 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  V9W62_RS05305 (V9W62_05305) - 1094478..1094711 (-) 234 WP_007610478.1 IDEAL domain-containing protein -
  V9W62_RS05310 (V9W62_05310) comK 1095027..1095605 (+) 579 WP_003155179.1 competence protein ComK Regulator
  V9W62_RS05315 (V9W62_05315) - 1095751..1096119 (+) 369 WP_043021328.1 iron chaperone -
  V9W62_RS05320 (V9W62_05320) - 1096146..1096517 (+) 372 WP_032866165.1 iron chaperone -
  V9W62_RS05325 (V9W62_05325) - 1096565..1097776 (-) 1212 WP_043021327.1 GNAT family N-acetyltransferase -
  V9W62_RS05330 (V9W62_05330) - 1097933..1098643 (-) 711 WP_032866163.1 YrpD family protein -
  V9W62_RS05335 (V9W62_05335) - 1098839..1099108 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  V9W62_RS05340 (V9W62_05340) - 1099141..1099458 (-) 318 WP_003155166.1 YbjQ family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=944487 V9W62_RS05310 WP_003155179.1 1095027..1095605(+) (comK) [Bacillus velezensis strain AP81]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=944487 V9W62_RS05310 WP_003155179.1 1095027..1095605(+) (comK) [Bacillus velezensis strain AP81]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTATGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAGCTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823