Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   V6U64_RS08770 Genome accession   NZ_CP145862
Coordinates   1907384..1908283 (-) Length   299 a.a.
NCBI ID   WP_073685698.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1902384..1913283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS08750 (V6U64_08750) - 1903228..1903911 (+) 684 WP_260313887.1 urease cluster protein -
  V6U64_RS08755 (V6U64_08755) - 1903978..1904619 (+) 642 WP_230310562.1 DUF4153 domain-containing protein -
  V6U64_RS08760 (V6U64_08760) - 1904670..1905002 (-) 333 WP_002886546.1 DUF805 domain-containing protein -
  V6U64_RS08765 (V6U64_08765) comA 1905113..1907209 (-) 2097 WP_175057392.1 peptide cleavage/export ABC transporter Regulator
  V6U64_RS08770 (V6U64_08770) comR 1907384..1908283 (-) 900 WP_073685698.1 helix-turn-helix transcriptional regulator Regulator
  V6U64_RS08775 (V6U64_08775) - 1908462..1909112 (-) 651 WP_022496033.1 phosphatase PAP2 family protein -
  V6U64_RS08780 (V6U64_08780) - 1909115..1909672 (-) 558 WP_022496034.1 ECF transporter S component -
  V6U64_RS08785 (V6U64_08785) - 1909962..1910471 (-) 510 WP_002883735.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  V6U64_RS08790 (V6U64_08790) trkA 1910763..1912112 (+) 1350 WP_022496357.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35170.62 Da        Isoelectric Point: 5.3700

>NTDB_id=940469 V6U64_RS08770 WP_073685698.1 1907384..1908283(-) (comR) [Streptococcus salivarius strain KSS4]
MNIKDSIGLRIKTERDRQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDKLSYIAKRLGKNMTDLLDHDNITIPDEYYE
MKNRLIKFPTYRNPERIKAKLALIEEVYEKFFELLPEEELLTLDILENILSFTSWEESPKVEEIYEDLFEQVKRKKKFST
NDLLVIDYYFFHLYGRKQYDKKLFERIVKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QFYSYKPNVFVLKAKYELLHKGNKKEAAENYDKAIMFASVLEDSVLEESIKAGKAADGL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=940469 V6U64_RS08770 WP_073685698.1 1907384..1908283(-) (comR) [Streptococcus salivarius strain KSS4]
TTGAACATAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGATCGCCAGCAGATGTCACGTGAAGTGTTATGTTT
AGATGGTGCGGAATTGACTGTTCGTCAGTTAATTCGCATTGAAAAAGGGGAGTCGCTCCCGTCTTTGGATAAATTATCTT
ATATTGCAAAACGTCTAGGAAAAAATATGACCGATTTATTGGATCATGATAATATTACTATCCCTGACGAATACTACGAG
ATGAAGAATCGTCTGATTAAGTTTCCAACGTATAGAAATCCAGAAAGAATAAAGGCTAAACTTGCCTTAATTGAGGAGGT
CTATGAGAAATTCTTTGAACTTCTCCCAGAAGAAGAATTGTTAACTCTAGATATTTTGGAAAATATTTTGAGTTTTACTA
GTTGGGAAGAGAGTCCTAAAGTTGAGGAAATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAAGAAATTCTCAACT
AACGATTTATTAGTTATTGACTATTATTTCTTCCATCTTTATGGAAGAAAGCAGTATGATAAAAAACTTTTTGAAAGAAT
CGTAAAGAGAGTATTAAATCAGGAAATTTGGACAGATGATGTCTATAATATTGTTTTATTTAACGATTTGATGGCTATCG
CTGCTTTGAAGATTTTTCACAATTCCTTCTCAGACTTCTTAACAGTTGTGGATAAAGCCTTAGCTGTTATAGAAAAATCA
CAATTCTATAGCTATAAACCTAATGTTTTTGTTCTCAAAGCCAAATATGAACTTCTGCATAAAGGAAACAAGAAAGAGGC
TGCAGAAAATTACGATAAGGCCATAATGTTTGCTTCCGTTTTAGAAGACTCGGTGCTAGAAGAAAGTATAAAGGCAGGTA
AAGCGGCAGATGGTTTATAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(75-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus salivarius strain HSISS4

98.662

100

0.987
  comR Streptococcus salivarius SK126

97.993

100

0.98
  comR Streptococcus thermophilus LMG 18311

94.649

100

0.946
  comR Streptococcus thermophilus LMD-9

93.98

100

0.94
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

42.475

100

0.425
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

42.14

100

0.421