Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6C54_RS07650 Genome accession   NZ_CP145201
Coordinates   1609487..1610359 (-) Length   290 a.a.
NCBI ID   WP_047796196.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1516943     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1604487..1615359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C54_RS07635 (V6C54_07645) xerC 1604774..1605664 (-) 891 WP_047796198.1 tyrosine recombinase XerC -
  V6C54_RS07640 (V6C54_07650) trmFO 1605901..1607208 (-) 1308 WP_030064791.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V6C54_RS07645 (V6C54_07655) topA 1607234..1609309 (-) 2076 WP_186306228.1 type I DNA topoisomerase -
  V6C54_RS07650 (V6C54_07660) dprA 1609487..1610359 (-) 873 WP_047796196.1 DNA-processing protein DprA Machinery gene
  V6C54_RS07655 (V6C54_07665) sucD 1610585..1611493 (-) 909 WP_002436344.1 succinate--CoA ligase subunit alpha -
  V6C54_RS07660 (V6C54_07670) sucC 1611515..1612681 (-) 1167 WP_002436291.1 ADP-forming succinate--CoA ligase subunit beta -
  V6C54_RS07665 (V6C54_07675) - 1612789..1613559 (-) 771 WP_047796195.1 ribonuclease HII -
  V6C54_RS07670 (V6C54_07680) ylqF 1613543..1614426 (-) 884 Protein_1473 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33455.70 Da        Isoelectric Point: 9.5817

>NTDB_id=937699 V6C54_RS07650 WP_047796196.1 1609487..1610359(-) (dprA) [Staphylococcus capitis subsp. urealyticus strain Sc1516943]
MIQHTLLKLYWANFATTQVHQFIKEYPEVISENALIQNEMIEDWVKRQTSSTVRRKLSLFKSLNTEVIFQEMTKMNLKYL
TYFDKHYPQLLKEIYDFPYVIFYKGNKQLFNCPHTLAVIGSRKSTLYTTQALEYLFPSFKSLKMTIISGLAYGADSIAHQ
VALKNQLPTIGVLGFGHSYHYPKSSLKTRENIERKGLVISEYQPHSPITRYKFPERNRLISGLARGLLITEAEKISGSQI
TVDCALEQNRNVYVLPGSMFNPMTKSNLLRLQEGAQVVLDESSILSDYIF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=937699 V6C54_RS07650 WP_047796196.1 1609487..1610359(-) (dprA) [Staphylococcus capitis subsp. urealyticus strain Sc1516943]
GTGATTCAACACACTTTATTGAAGCTCTATTGGGCTAATTTCGCCACAACGCAAGTTCATCAATTTATTAAAGAATATCC
AGAAGTTATTTCAGAAAACGCACTAATTCAAAATGAGATGATTGAGGATTGGGTTAAAAGACAAACCTCATCCACAGTCA
GGAGAAAATTGAGCTTATTTAAATCACTTAATACAGAAGTTATATTTCAAGAAATGACTAAAATGAACCTCAAATATTTA
ACTTACTTTGATAAACATTATCCTCAATTACTTAAAGAAATTTATGATTTCCCATATGTAATTTTTTATAAAGGAAATAA
ACAACTATTTAATTGTCCTCATACTTTAGCTGTTATAGGCTCAAGAAAGTCAACTTTATATACAACTCAAGCTTTGGAAT
ATCTTTTCCCATCATTTAAATCACTAAAAATGACGATTATTTCAGGATTAGCATATGGTGCAGATAGTATAGCTCACCAA
GTTGCACTAAAAAATCAACTTCCAACAATAGGCGTTCTTGGCTTCGGCCATTCATATCATTATCCTAAATCATCATTAAA
GACAAGAGAGAATATCGAACGAAAAGGACTAGTTATAAGTGAGTATCAACCTCATTCTCCCATAACCAGATATAAATTTC
CTGAAAGAAATAGATTGATTAGTGGACTCGCTCGGGGTCTATTAATTACAGAAGCAGAGAAAATAAGCGGTAGTCAAATA
ACAGTAGACTGCGCTTTAGAACAAAACCGGAATGTATATGTTTTACCAGGATCAATGTTTAATCCTATGACCAAAAGTAA
TTTACTTAGACTTCAAGAGGGGGCACAAGTCGTTTTAGATGAAAGTAGTATTCTTTCAGACTACATTTTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

59.028

99.31

0.586
  dprA Staphylococcus aureus MW2

59.028

99.31

0.586