Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | V6C54_RS06235 | Genome accession | NZ_CP145201 |
| Coordinates | 1283768..1284742 (+) | Length | 324 a.a. |
| NCBI ID | WP_047796322.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1516943 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1278768..1289742
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C54_RS06200 (V6C54_06220) | rpmG | 1279279..1279428 (+) | 150 | WP_002433802.1 | 50S ribosomal protein L33 | - |
| V6C54_RS06205 (V6C54_06225) | - | 1279579..1280130 (+) | 552 | WP_029625710.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| V6C54_RS06210 (V6C54_06230) | - | 1280131..1281594 (+) | 1464 | WP_047796324.1 | rhomboid family intramembrane serine protease | - |
| V6C54_RS06215 (V6C54_06235) | - | 1281575..1281778 (+) | 204 | WP_002433937.1 | YqgQ family protein | - |
| V6C54_RS06220 (V6C54_06240) | - | 1281775..1282761 (+) | 987 | WP_002433633.1 | ROK family glucokinase | - |
| V6C54_RS06225 (V6C54_06245) | - | 1282761..1283087 (+) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| V6C54_RS06230 (V6C54_06250) | - | 1283087..1283710 (+) | 624 | WP_047796323.1 | MBL fold metallo-hydrolase | - |
| V6C54_RS06235 (V6C54_06255) | comGA | 1283768..1284742 (+) | 975 | WP_047796322.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| V6C54_RS06240 (V6C54_06260) | comGB | 1284714..1285781 (+) | 1068 | WP_047796321.1 | competence type IV pilus assembly protein ComGB | - |
| V6C54_RS06245 (V6C54_06265) | comGC | 1285800..1286111 (+) | 312 | WP_029625707.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| V6C54_RS06250 (V6C54_06270) | comGD | 1286089..1286538 (+) | 450 | WP_162488576.1 | competence type IV pilus minor pilin ComGD | - |
| V6C54_RS06255 (V6C54_06275) | - | 1286525..1286824 (+) | 300 | WP_002433765.1 | hypothetical protein | - |
| V6C54_RS06260 (V6C54_06280) | comGF | 1286742..1287233 (+) | 492 | WP_037560565.1 | competence type IV pilus minor pilin ComGF | - |
| V6C54_RS06265 (V6C54_06285) | - | 1287403..1287912 (+) | 510 | WP_029625706.1 | shikimate kinase | - |
| V6C54_RS06270 (V6C54_06290) | gcvT | 1288121..1289212 (+) | 1092 | WP_047796320.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37052.85 Da Isoelectric Point: 7.6989
>NTDB_id=937693 V6C54_RS06235 WP_047796322.1 1283768..1284742(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain Sc1516943]
MKMLFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKF
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLCSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
MKMLFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKF
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLCSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=937693 V6C54_RS06235 WP_047796322.1 1283768..1284742(+) (comGA) [Staphylococcus capitis subsp. urealyticus strain Sc1516943]
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTTGCCCAAAGCGGAAGATATACTTATAAATTT
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
GTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAGGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTTGCCCAAAGCGGAAGATATACTTATAAATTT
CAAAATATGTATTACTTAAGAATCTCTACGCTACCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
GTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAGGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.588 |
99.691 |
0.704 |
| comGA | Staphylococcus aureus N315 |
70.588 |
99.691 |
0.704 |