Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VZO67_RS01615 Genome accession   NZ_CP143079
Coordinates   321640..322083 (-) Length   147 a.a.
NCBI ID   WP_006248858.1    Uniprot ID   -
Organism   Pasteurella multocida strain Pm126     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 316640..327083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZO67_RS01595 (VZO67_01600) - 317524..319575 (-) 2052 WP_230268918.1 DNA topoisomerase III -
  VZO67_RS01600 (VZO67_01605) - 319735..320253 (-) 519 WP_230268917.1 hemophilus-specific protein -
  VZO67_RS01605 (VZO67_01610) - 320371..321138 (+) 768 WP_230268916.1 hypothetical protein -
  VZO67_RS01610 (VZO67_01615) - 321104..321499 (-) 396 WP_230268915.1 hypothetical protein -
  VZO67_RS01615 (VZO67_01620) ssb 321640..322083 (-) 444 WP_006248858.1 single-stranded DNA-binding protein Machinery gene
  VZO67_RS01620 (VZO67_01625) - 322397..322906 (-) 510 WP_230268914.1 DUF3158 family protein -
  VZO67_RS01625 (VZO67_01630) - 322915..323673 (-) 759 WP_230268913.1 PFL_4669 family integrating conjugative element protein -
  VZO67_RS01630 (VZO67_01635) - 323851..325041 (-) 1191 WP_230268912.1 STY4528 family pathogenicity island replication protein -
  VZO67_RS01635 (VZO67_01640) - 325200..325757 (-) 558 WP_134916588.1 DUF2857 domain-containing protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16731.47 Da        Isoelectric Point: 4.9657

>NTDB_id=928092 VZO67_RS01615 WP_006248858.1 321640..322083(-) (ssb) [Pasteurella multocida strain Pm126]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWNDKNTGERRELTEWHRIVFYRRQAEVCGQYLRKGSKVYIEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRNSSNGYEGQQTVNQQQTPSAPPPIPPSDNFDDDIPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=928092 VZO67_RS01615 WP_006248858.1 321640..322083(-) (ssb) [Pasteurella multocida strain Pm126]
ATGGCTGGCATCAATAAAGTCATTATTGTAGGCAACCTAGGCAATGATCCTGAAATGCGGACTATGCCTAATGGCGAAGC
AGTTGCAAATATCAGTGTAGCAACGTCAGAGTCTTGGAATGATAAAAATACCGGAGAACGCCGAGAGCTTACGGAATGGC
ACCGTATTGTGTTCTACCGCCGTCAAGCAGAAGTCTGTGGTCAATATCTACGGAAAGGTTCAAAAGTATATATAGAAGGT
CGTTTACGTACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTATACCACTGAAATTCAAGGTGATGTACTACAGAT
GCTTGATAGTCGTAACTCGTCCAATGGATATGAAGGACAGCAAACAGTCAATCAACAGCAGACTCCATCTGCTCCGCCTC
CTATACCACCTTCCGATAACTTCGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

65

100

0.796
  ssb Vibrio cholerae strain A1552

52.023

100

0.612
  ssb Neisseria meningitidis MC58

45.665

100

0.537
  ssb Neisseria gonorrhoeae MS11

45.087

100

0.531
  ssb Latilactobacillus sakei subsp. sakei 23K

31.977

100

0.374